TMPRSS3

Serin 3 transmembranska proteaza jest enzim koji je kod ljudi kodiran genom TMPRSS3 sa hromosoma 21.^[5][6][7]

TMPRSS3
Identifikatori
Aliasi	TMPRSS3
Vanjski ID-jevi	OMIM: 605511 MGI: 2155445 HomoloGene: 56985 GeneCards: TMPRSS3
Lokacija gena (čovjek) Hrom. Hromosom 21 (čovjek)[1] Bend 21q22.3 Početak 42,371,887 bp[1] Kraj 42,396,091 bp[1]
Lokacija gena (miš) Hrom. Hromosom 17 (miš)[2] Bend 17|17 A3.3 Početak 31,398,239 bp[2] Kraj 31,417,951 bp[2]
Obrazac RNK ekspresije Više referentnih podataka o ekspresiji
Ontologija gena Molekularna funkcija • scavenger receptor activity • sodium channel regulator activity • GO:0070122 peptidase activity • serine-type peptidase activity • hydrolase activity • serine-type endopeptidase activity Ćelijska komponenta • integral component of membrane • neuronal cell body • endoplasmic reticulum membrane • Endoplazmatski retikulum • membrana Biološki proces • cellular sodium ion homeostasis • sluh • receptor-mediated endocytosis • Proteoliza • regulation of molecular function • vesicle-mediated transport • Endocitoza Izvori:Amigo / QuickGO
Ortolozi
Vrste	Čovjek	Miš
Entrez	64699	140765
Ensembl	ENSG00000160183	ENSMUSG00000024034
UniProt	P57727	Q8K1T0
RefSeq (mRNK)	NM_001256317 NM_024022 NM_032401 NM_032404 NM_032405	NM_001163776 NM_080727
RefSeq (bjelančevina)	NP_001243246 NP_076927 NP_115780 NP_115781	NP_001157248 NP_542765
Lokacija (UCSC)	Chr 21: 42.37 – 42.4 Mb	Chr 17: 31.4 – 31.42 Mb
PubMed pretraga	[3]	[4]
Wikipodaci
Pogledaj/uredi – čovjek Pogledaj/uredi – miš

Aminokiselinska sekvenca

Dužina polipeptidnog lanca je 454 aminokiseline, a molekulska težina 49.405 Da.^[7]

• C: Cistein
• D: Asparaginska kiselina
• E: Glutaminska kiselina
• F: Fenilalanin
• G: Glicin
• H: Histidin
• I: Izoleucin
• K: Lizin
• L: Leucin
• M: Metionin
• N: Asparagin
• P: Prolin
• Q: Glutamin
• R: Arginin
• S: Serin
• T: Treonin
• V: Valin
• W: Triptofan
• Y: Tirozin

10		20		30		40		50
MGENDPPAVE		APFSFRSLFG		LDDLKISPVA		PDADAVAAQI		LSLLPLKFFP
IIVIGIIALI		LALAIGLGIH		FDCSGKYRCR		SSFKCIELIA		RCDGVSDCKD
GEDEYRCVRV		GGQNAVLQVF		TAASWKTMCS		DDWKGHYANV		ACAQLGFPSY
VSSDNLRVSS		LEGQFREEFV		SIDHLLPDDK		VTALHHSVYV		REGCASGHVV
TLQCTACGHR		RGYSSRIVGG		NMSLLSQWPW		QASLQFQGYH		LCGGSVITPL
WIITAAHCVY		DLYLPKSWTI		QVGLVSLLDN		PAPSHLVEKI		VYHSKYKPKR
LGNDIALMKL		AGPLTFNEMI		QPVCLPNSEE		NFPDGKVCWT		SGWGATEDGA
GDASPVLNHA		AVPLISNKIC		NHRDVYGGII		SPSMLCAGYL		TGGVDSCQGD
SGGPLVCQER		RLWKLVGATS		FGIGCAEVNK		PGVYTRVTSF		LDWIHEQMER
DLKT

Funkcija

Ovaj gen kodira člana porodice serin proteaza. Kodirani protein sadrži domen serinske proteaze, transmembranski domen, domen sličan LDL receptoru i cisteinom bogat domen receptora za čišćenje . Poznato je da su serinske proteaze uključene u različite biološke procese, čiji kvar često dovodi do ljudskih bolesti i poremećaja. Ovaj gen je identificiran po povezanosti s urođenom i djetinjstvenom pojavom autosomno recesivnom gluhoćom. Ovaj gen se eksprimira u fetusnoj kohleji i mnogim drugim tkivima, a smatra se da je uključen u razvoj i održavanje unutrašnjeg uha ili sadržaja perilimfe i endolimfe. Ovaj gen je također identificiran kao s tumorom povezan gen koji je preeksprimiran u tumorima jajnika. Opisane su četiri alternativno prerađene varijante transkripta, od kojih dvije kodiraju identične proizvode.^[7]

Reference

1. GRCh38: Ensembl release 89: ENSG00000160183 - Ensembl, maj 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000024034 - Ensembl, maj 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Masmoudi S, Antonarakis SE, Schwede T, Ghorbel AM, Gratri M, Pappasavas MP, Drira M, Elgaied-Boulila A, Wattenhofer M, Rossier C, Scott HS, Ayadi H, Guipponi M (Jul 2001). "Novel missense mutations of TMPRSS3 in two consanguineous Tunisian families with non-syndromic autosomal recessive deafness". Hum Mutat. 18 (2): 101–8. doi:10.1002/humu.1159. PMID 11462234. S2CID 7917415.
6. Wattenhofer M, Di Iorio MV, Rabionet R, Dougherty L, Pampanos A, Schwede T, Montserrat-Sentis B, Arbones ML, Iliades T, Pasquadibisceglie A, D'Amelio M, Alwan S, Rossier C, Dahl HH, Petersen MB, Estivill X, Gasparini P, Scott HS, Antonarakis SE (Mar 2002). "Mutations in the TMPRSS3 gene are a rare cause of childhood nonsyndromic deafness in Caucasian patients". J Mol Med. 80 (2): 124–31. doi:10.1007/s00109-001-0310-6. PMID 11907649. S2CID 8185405.
7. "Entrez Gene: TMPRSS3 transmembrane protease, serine 3".

Dopunska literatura

• Guipponi M, Antonarakis SE, Scott HS (2007). "TMPRSS3, a type II transmembrane serine protease mutated in non-syndromic autosomal recessive deafness". Front. Biosci. 13 (13): 1557–67. doi:10.2741/2780. PMID 17981648.
• Bonné-Tamir B, DeStefano AL, Briggs CE, et al. (1996). "Linkage of congenital recessive deafness (gene DFNB10) to chromosome 21q22.3". Am. J. Hum. Genet. 58 (6): 1254–9. PMC 1915077. PMID 8651303.
• Wallrapp C, Hähnel S, Müller-Pillasch F, et al. (2000). "A novel transmembrane serine protease (TMPRSS3) overexpressed in pancreatic cancer". Cancer Res. 60 (10): 2602–6. PMID 10825129.
• Hattori M, Fujiyama A, Taylor TD, et al. (2000). "The DNA sequence of human chromosome 21". Nature. 405 (6784): 311–9. Bibcode:2000Natur.405..311H. doi:10.1038/35012518. PMID 10830953.
• Underwood LJ, Shigemasa K, Tanimoto H, et al. (2001). "Ovarian tumor cells express a novel multi-domain cell surface serine protease". Biochim. Biophys. Acta. 1502 (3): 337–50. doi:10.1016/s0925-4439(00)00058-2. PMID 11068177.
• Scott HS, Kudoh J, Wattenhofer M, et al. (2001). "Insertion of beta-satellite repeats identifies a transmembrane protease causing both congenital and childhood onset autosomal recessive deafness". Nat. Genet. 27 (1): 59–63. doi:10.1038/83768. PMID 11137999.
• Ben-Yosef T, Wattenhofer M, Riazuddin S, et al. (2001). "Novel mutations of TMPRSS3 in four DFNB8/B10 families segregating congenital autosomal recessive deafness". J. Med. Genet. 38 (6): 396–400. doi:10.1136/jmg.38.6.396. PMC 1734898. PMID 11424922.
• Guipponi M, Vuagniaux G, Wattenhofer M, et al. (2003). "The transmembrane serine protease (TMPRSS3) mutated in deafness DFNB8/10 activates the epithelial sodium channel (ENaC) in vitro" (PDF). Hum. Mol. Genet. 11 (23): 2829–36. doi:10.1093/hmg/11.23.2829. PMID 12393794.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Lee YJ, Park D, Kim SY, Park WJ (2003). "Pathogenic mutations but not polymorphisms in congenital and childhood onset autosomal recessive deafness disrupt the proteolytic activity of TMPRSS3". J. Med. Genet. 40 (8): 629–31. doi:10.1136/jmg.40.8.629. PMC 1735556. PMID 12920079.
• Clark HF, Gurney AL, Abaya E, et al. (2003). "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment". Genome Res. 13 (10): 2265–70. doi:10.1101/gr.1293003. PMC 403697. PMID 12975309.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
• Ahmed ZM, Li XC, Powell SD, et al. (2004). "Characterization of a new full length TMPRSS3 isoform and identification of mutant alleles responsible for nonsyndromic recessive deafness in Newfoundland and Pakistan". BMC Med. Genet. 5: 24. doi:10.1186/1471-2350-5-24. PMC 523852. PMID 15447792.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Wattenhofer M, Sahin-Calapoglu N, Andreasen D, et al. (2005). "A novel TMPRSS3 missense mutation in a DFNB8/10 family prevents proteolytic activation of the protein" (PDF). Hum. Genet. 117 (6): 528–35. doi:10.1007/s00439-005-1332-x. PMID 16021470. S2CID 27045077.
• Stelzl U, Worm U, Lalowski M, et al. (2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. 122 (6): 957–68. doi:10.1016/j.cell.2005.08.029. hdl:11858/00-001M-0000-0010-8592-0. PMID 16169070. S2CID 8235923.
• Hu YH, Warnatz HJ, Vanhecke D, et al. (2006). "Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins". BMC Genomics. 7: 155. doi:10.1186/1471-2164-7-155. PMC 1526728. PMID 16780588.
• Elbracht M, Senderek J, Eggermann T, et al. (2007). "Autosomal recessive postlingual hearing loss (DFNB8): compound heterozygosity for two novel TMPRSS3 mutations in German siblings". J. Med. Genet. 44 (6): e81. doi:10.1136/jmg.2007.049122. PMC 2752172. PMID 17551081.

Vanjski linkovi