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微囊菌属（学名：Microascus），也称作小囊菌属，是小囊菌科的一属。
本属包括以下物种：[1]
- Microascus aculeatus B.D Sun, Y.G.Zhou & A.J.Chen
- Microascus albonigrescens (Sopp) Curzi
- Microascus alveolaris Sand.-Den., Gené & Guarro
- Microascus anfractus Z.F.Zhang, F.Liu & L.Cai
- Microascus appendiculatus Woudenb. & Samson
- Microascus atrogriseus Woudenb. & Samson
- Microascus boulangeri (Curzi) Lodha
- Microascus brevicaulis S.P.Abbott
- Microascus brunneosporus Sand.-Den., Gené & Guarro
- Microascus campaniformis Sand.-Den., Cano & Deanna A.Sutton
- Microascus chartarum (G.Sm.) Sand.-Den., Gené & Guarro
- Microascus chinensis Jin Yu, Sand.-Den. & Gené
- Microascus cinereus Curzi
- Microascus cirrosus Curzi
- Microascus cleistocarpus Woudenb., X.Wei Wang & Samson
- Microascus collaris Z.F.Zhang & L.Cai
- Microascus croci (J.F.H.Beyma) Sand.-Den., Gené & Guarro
- Microascus decorticatus C.Ram
- Microascus desmosporus (Lechmere) Curzi
- Microascus dimonatus Sage, Steiman, Seigle-Mur. & Guiraud, 1995
- Microascus doguetii C.Moreau
- Microascus ennothomasiorum Brasch, Beck-Jendroschek, K.Voss, Iturrieta-Gonzalez & Gené
- Microascus expansus Sand.-Den., Gené & Cano
- Microascus fusisporus Woudenb. & Samson
- Microascus globulosus Z.F.Zhang, F.Liu & L.Cai
- Microascus gracilis (Samson) Sand.-Den., Gené & Guarro
- Microascus hollandicus Woudenb. & Samson
- Microascus hyalinus (Malloch & Cain) Sand.-Den., Gené & Guarro
- Microascus inopinatus Udagawa & Furuya
- Microascus intricatus Sand.-Den., Stchigel & Deanna A.Sutton
- Microascus levis Z.F.Zhang & L.Cai
- Microascus longicollis Hubka, Lysková, Čmoková & M.Kolařík
- Microascus longirostris Zukal
- Microascus lunasporus P.M.Jones
- Microascus macrosporus (G.F.Orr) Sand.-Den., Gené & Guarro
- Microascus manginii (Loubière) Curzi
- Microascus melanosporus (Udagawa) Woudenb. & Samson
- Microascus microcordiformis Matsush.
- Microascus micronesiensis Woudenb., Seifert & Samson
- Microascus murinus (Samson & Klopotek) Sand.-Den., Gené & Guarro
- Microascus nidicola [2]
- Microascus niger (Sopp) Curzi
- Microascus onychoides Jin Yu, Sand.-Den. & Gené
- Microascus paisii (Pollacci) Sand.-Den., Gené & Guarro
- Microascus pedrosoi C.A.Fuentes & F.A.Wolf
- Microascus pilosus Valldos. & Guarro
- Microascus pseudolongirostris Jagielski, Sand.-Den., Krzyściak & Gené
- Microascus pseudopaisii Woudenb. & Samson
- Microascus pyramidus G.L.Barron & J.C.Gilman
- Microascus restrictus Sand.-Den., Gené & Deanna A.Sutton
- Microascus rothbergiorum Houbraken, Istel & Yarden
- Microascus senegalensis Arx
- Microascus singularis (Sacc.) Malloch & Cain
- Microascus soppii S.P.Abbott[2]
- Microascus sparsimycelialis Z.F.Zhang & L.Cai
- Microascus spinosporus B.D Sun, Y.G.Zhou & A.J.Chen
- Microascus superficialis Z.F.Zhang & L.Cai
- Microascus tardifaciens Y.Horie & Udagawa
- Microascus terreus (Kamyschko) Jagielski, Sand.-Den. & Gené
- Microascus trautmannii Woudenb. & Samson
- Microascus trigonosporus C.W.Emmons & B.O.Dodge
- Microascus trigonus Z.F.Zhang & L.Cai
- Microascus verrucosus Sand.-Den., Gené & Cano
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