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糞殼菌綱（學名：Sordariomycetes）是真菌界子囊菌門盤菌亞門的一個綱[1]，其下包括有15個目、64個科、1119個屬及 10564個品種[2]。糞殼菌綱物種一般都會產生子囊。
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- 团壳菌目 Boliniales
- 美球菌目 Calosphaeriales
- 刺球殼目 Chaetosphaeriales
- 毛孢殼目 Coniochaetales
- 间座壳菌目 Diaporthales
- Acrodictyaceae
- Apiosporopsidaceae
- Apoharknessiaceae
- Asterosporiaceae
- Aurantiopycnidiellaceae
- Auratiopycnidiellaceae
- Coryneaceae
- Cryphonectriaceae
- Cytosporaceae
- Diaporthaceae
- Diaporthosporellaceae
- Diaporthostomataceae
- Dwiroopaceae
- Erythrogloeaceae
- Foliocryphiaceae
- Gnomoniaceae
- Harknessiaceae
- Juglanconidaceae
- Lamproconiaceae
- Macrohilaceae
- Mastigosporellaceae
- Melanconiaceae
- Melanconidaceae
- Melanconiellaceae
- Melanosporellaceae
- Neomelanconiellaceae
- Phaeoappendicosporaceae
- Phaeochorellaceae
- Prosopidicolaceae
- Pseudomelanconidaceae
- Pseudoplagiostomataceae
- Pseudovalsaceae
- Pyrisporaceae
- Schizoparmaceae
- Schizoparmeaceae
- Stilbosporaceae
- Sydowiaceae
- Sydowiellaceae
- Synnemasporellaceae
- 椿启介菌科 Tubakiaceae
- 黑腐皮壳科 Valsaceae
- 巨座壳菌目 Magnaporthales
- 长喙壳菌目 Ophiostomatales
- 粪壳菌目 Sordariales
- 匙孢菌目 Spathulosporales Kohlm. 1973
- 匙孢菌科 Spathulosporaceae Kohlm. 1973
- Retrostium Nakagiri & Tad.Ito, 1997
- 匙孢菌属 Spathulospora A.R.Caval. & T.W.Johnson, 1965
- 匙孢菌科 Spathulosporaceae Kohlm. 1973
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- 炭角菌目 Xylariales
- Atractosporales Huang Zhang, K.D. Hyde & Maharachch. 2017
- Atractosporaceae
- Conlariaceae
- Pseudoproboscisporaceae
- Neodiluviicola W.Dong & H.Zhang, 2021
- Neodiluviicola aquatica' (W.Dong, Huang Zhang & K.D.Hyde) W.Dong & H.Zhang[3]
- Pseudoproboscispora Punith. 1999
- Pseudoproboscispora aquatica (S.W.Wong & K.D.Hyde) Punith.
- Pseudoproboscispora caudae-suis (Ingold) J.Campb., Shearer, J.L.Crane & Fallah
- Pseudoproboscispora thailandensis W.Dong, Huang Zhang & K.D.Hyde
- Neodiluviicola W.Dong & H.Zhang, 2021
- Cancellidiales K.D. Hyde & Hongsanan 2021
- Cancellidiaceae K.D. Hyde & Hongsanan 2021
- Cancellidium
- Obliquiminima W.Dong, H.Zhang & K.D.Hyde, 2021
- Obliquiminima hyalina' W.Dong, H.Zhang & K.D.Hyde, 2021[3]
- Cancellidiaceae K.D. Hyde & Hongsanan 2021
- Distoseptisporales Z.L. Luo, K.D. Hyde & H.Y. Su 2019
- Distoseptisporaceae K.D. Hyde & McKenzie 2016
- Distoseptispora K.D.Hyde, McKenzie & Maharachch., 2016
- Rhexoacrodictys
- Distoseptisporaceae K.D. Hyde & McKenzie 2016
- Fuscosporellales
- Fuscosporellaceae
- Koralionastetales
- Koralionastetaceae
- 路霉目 Lulworthiales
- Hispidicarpomycetaceae
- 路霉科 Lulworthiaceae
- 小煤炭菌目 Meliolales
- 黑痣菌目 Phyllachorales
- Pleurotheciales
- Pleurotheciaceae
- Adelosphaeria Réblová, 2015
- Anapleurothecium Hern.-Rest., R.F.Castañeda & Gené, 2017
- Carpoligna F.A.Fern. & Huhndorf
- Dematipyriforma
- Helicoascotaiwania Dayar., Maharachch. & K.D.Hyde, 2019
- Melanotrigonum Réblová, 2015
- Neomonodictys Y.Z.Lu, C.G.Lin & K.D.Hyde, 2020
- Phaeoisaria
- Pleurotheciella
- Pleurothecium
- Rhexoacrodictys W.A.Baker & Morgan-Jones
- Saprodesmium W.Dong & Doilom, 2021
- Sterigmatobotrys Oudem.
- Pleurotheciaceae
- Savoryellales
- Savoryellaceae
- Aquabispora Jing Yang, E.B.G.Jones & K.D.Hyde, 2023
- Ascotaiwania Sivan. & H.S.Chang, 1992
- Ascotaiwania coffeae[4]
- Ascotaiwania hsilio H.S.Chang & S.Y.Hsieh
- Ascotaiwania latericolla Réblová, Hern.-Restr. & J.Fourn.
- Ascotaiwania licualae J.Fröhl. & K.D.Hyde
- Ascotaiwania lignicola Sivan. & H.S.Chang
- Ascotaiwania mauritiana Dulym., P.F.Cannon, K.D.Hyde & Peerally
- Ascotaiwania mitriformis Ranghoo & K.D.Hyde
- Ascotaiwania pallida K.D.Hyde & Goh
- Ascotaiwania palmicola K.D.Hyde
- Ascotaiwania pennisetorum M.K.M.Wong & K.D.Hyde
- Ascotaiwania sawadae H.S.Chang & S.Y.Hsieh
- Ascotaiwania wulai H.S.Chang & S.Y.Hsieh
- Ascothailandia Sri-indr., Boonyuen, Sivichai & E.B.G.Jones, 2010
- 管隔孢属 Canalisporium Nawawi & Kuthub.
- Dematiosporium Z.L.Luo, K.D.Hyde & H.Y.Su, 2019
- Kaseifertia Réblová, Hern.-Restr. & J.Fourn., 2020
- Monotosporella S.Hughes
- Neoascotaiwania Hern.-Restr., R.F.Castañeda & Guarro, 2017
- Obliquifusoideum W.Dong & Doilom, 2021
- Savoryella E.B.G.Jones & R.A.Eaton, 1969
- Savoryellaceae
- 假毛球壳目 Trichosphaeriales
- Xenospadicoidales
- Xenospadicoidaceae
- Calyptosphaeria Réblová & A.N.Mill., 2018
- Neospadicoides Z.L.Luo, K.D.Hyde & H.Y.Su, 2019
- Neospadicoides amphibia[5]
- Neospadicoides aquatica Z.L.Luo, K.D.Hyde & H.Y.Su
- Neospadicoides bambusicola J.Y.Zhang, Y.Z.Lu & K.D.Hyde
- Neospadicoides lignicola Z.L.Luo, K.D.Hyde & H.Y.Su
- Neospadicoides thailandica D.F.Bao, H.Y.Su, K.D.Hyde & Z.L.Luo
- Neospadicoides yunnanensis Z.L.Luo, K.D.Hyde & H.Y.Su
- Pseudodiplococcium Hern.-Restr., J.Mena & Gené, 2017
- Spadicoides
- Xenospadicoides
- Xenospadicoidaceae
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以下各科由於其歸屬關係未能確定，現時屬於「地位未定」，不歸入任何亞綱與目：
- Annulatascaceae
- Amphorula Grove
- Annulatascus K.D.Hyde
- Annulatascus apiculatus F.R.Barbosa & Gusmão
- Annulatascus aquaticus W.H.Ho, K.D.Hyde & Hodgkiss
- Annulatascus aquatorba [6]
- Annulatascus chiangmaiensis X.D.Yu, W.Dong & H.Zhang
- Annulatascus citrisporus J.Fröhl. & K.D.Hyde
- Annulatascus fusiformis K.D.Hyde & S.W.Wong
- Annulatascus hongkongensis W.H.Ho, Ranghoo, K.D.Hyde & Hodgkiss
- Annulatascus joannae C.K.M.Tsui, Hodgkiss & K.D.Hyde
- Annulatascus lacteus C.K.M.Tsui, Hodgkiss & K.D.Hyde
- Annulatascus licualae J.Fröhl. & K.D.Hyde
- Annulatascus liputii L.Cai & K.D.Hyde
- Annulatascus menglensis D.M.Hu, L.Cai & K.D.Hyde
- Annulatascus nakhonensis W.Dong, H.Zhang & K.D.Hyde
- Annulatascus palmietensis Goh, K.D.Hyde & Steinke
- Annulatascus saprophyticus Z.L.Luo & K.D.Hyde
- Annulatascus songkhlaensis W.Dong, H.Zhang & K.D.Hyde
- Annulatascus thailandensis W.Dong, H.Zhang & K.D.Hyde
- Annulatascus tropicalis Ranghoo & K.D.Hyde
- Annulatascus velatisporus K.D.Hyde
- Annulusmagnus J.Campbell & Shearer
- Aqualignicola V.M.Ranghoo, K.M.Tsui & K.D.Hyde, 2001
- Aquasphaeria K.D.Hyde, 1995
- Aquaticola W.H.Ho, K.M.Tsui, Hodgkiss & K.D.Hyde
- Ascitendus J.Campbell & Shearer
- Ayria Fryar & K.D.Hyde, 2004
- Brunneosporella Ranghoo & K.D.Hyde, 2001
- Cataractispora K.D.Hyde, S.W.Wong & E.B.G.Jones, 1999
- Ceratostomella
- Chaetoconis Clem., 1909
- Chaetorostrum S.E.Zelski, H.A.Raja, A.N.Miller & C.A.Shearer, 2011
- Clohiesia
- Conlarium F. Liu & L. Cai 2012
- Conlarium aquaticum W.Dong, Huang Zhang & K.D.Hyde
- Conlarium baiseense L.Xie, Y.L.Chen & B.Liu
- Conlarium dupliciascosporum F.Liu & L.Cai
- Conlarium indicum Rashmi Dubey & Manikpuri
- Conlarium nanningense L.Xie, Y.L.Chen & B.Liu
- Conlarium sacchari L.Xie, Y.L.Chen & B.Liu
- Conlarium subglobosum X.D.Yu, W.Dong & H.Zhang, 2021[3]
- Conlarium thailandense X.D.Yu, H.Zhang & K.D.Hyde
- Cyanoannulus Raja, J.Campb. & Shearer, 2003
- Dictyosporella Abdel-Aziz, 2015
- Dictyosporella aquatica Abdel-Aziz
- Dictyosporella chiangmaiensis X.D.Yu, W.Dong & H.Zhang[3]
- Dictyosporella ellipsoidea W.Dong, H.Zhang & K.D.Hyde[3]
- Dictyosporella guizhouensis J.Yang & K.D.Hyde
- Dictyosporella hydei H.Y.Song & D.M.Hu
- Dictyosporella thailandensis W.Dong, Huang Zhang & K.D.Hyde
- Diluviicola
- Fluminicola S.W.Wong, K.D.Hyde & E.B.G.Jones, 1999
- Fluminicola aquatica W.Dong, Huang Zhang & K.D.Hyde
- Fluminicola bipolaris S.W.Wong, K.D.Hyde & E.B.G.Jones
- Fluminicola saprophytica W.Dong, H.Zhang & K.D.Hyde
- Fluminicola striata X.D.Yu, W.Dong & H.Zhang, 2021[3]
- Fluminicola thailandensis W.Dong, H.Zhang & K.D.Hyde
- Fusoidigranularius W.Dong, H.Zhang & K.D.Hyde, 2021
- Fusoidigranularius nilensis (Abdel-Wahab & Abdel-Aziz) W.Dong, H.Zhang & K.D.Hyde, 2021[3]
- Fusoidispora Vijaykrishna, Jeewon & K.D.Hyde, 2005
- Longicollum Zelski, F.R.Barbosa, Raja, A.N.Mill. & Shearer, 2011
- Longivarius W.Dong, H.Zhang & K.D.Hyde, 2021
- Longivarius aquatorbae (Boonyuen & Sri-indr.) W.Dong, H.Zhang & K.D.Hyde, 2021[3]
- Pseudoannulatascus
- Pseudoproboscispora Punith.
- Rhamphoria Niessl, 1876
- Submersisphaeria K.D.Hyde
- Teracosphaeria Réblová & Seifert, 2007
- Torrentispora K.D.Hyde, W.H.Ho, E.B.G.Jones, C.K.M.Tsui & S.W.Wong, 2000
- Vertexicola
- 梨孢假殼科 Apiosporaceae
- Batistiaceae
- Glomerellaceae
- Jobiellaceae
- 六月舟霉科 Junewangiaceae J.W. Xia & X.G. Zhang 2017
- 垂口霉科 Kathistaceae Malloch & M. Blackw. 1990
- Ectomyces P. Tate 1927
- 垂口霉属 Kathistes D.W.Malloch & M.Blackwell, 1990
- Mattirolella S.Colla, 1929
- Termitaria Thaxt., 1920
- Termitariopsis M.Blackwell, R.A.Samson & J.W.Kimbrough, 1980
- 巨座壳菌科 Magnaporthaceae
- Obryzaceae
- Papulosaceae
- Flumicola
- Papulosa Kohlm. & Volkm.-Kohlm., 1993
- Wongia Khemmuk, Geering & R.G.Shivas, 2016
- 伞型束梗孔菌科 Plectosphaerellaceae
- 葚孢科 Sporidesmiaceae
- 葚孢属 Sporidesmium
- Thyridiaceae
- Balzania Spegazzini, 1899
- Mattirolia Berl. & Bres.
- Pleurocytospora Petrak, 1923
- Pseudoneoconiothyrium Wanas., Phukhams., Camporesi & K.D.Hyde, 2018
- Sinosphaeria J.Z.Yue & O.E.Erikss., 1987
- Thyridium Nitschke
- Thyronectria Sacc., 1875
- Thyronectroidea Seaver, 1909
- Vialaeaceae
- Vialaea Sacc.
- 目和科的地位未定的属：
- Abyssomyces Kohlm., 1970
- Acerbiella
- Acrospermoides
- Ameromassaria K.Hara, 1918
- Amphisphaerellula Gucevic, 1952
- Amphorulopsis Petr.
- Amylis Spegazzini, 1922
- Anthostomaria (P.A.Saccardo) Theissen & H.Sydow, 1918
- Anthostomellina L.A.Kantshaveli, 1928
- Aquamarina Kohlm., Volkm.-Kohlm. & O.E. Erikss. 1996
- Aquapteridospora Jiao Yang, K.D.Hyde & Maharachch., 2015
- Aquapteridospora aquatica X.D.Yu, W.Dong & H.Zhang, 2021[7]
- Aquapteridospora bambusinum (D.Q.Dai & K.D.Hyde) D.F.Bao
- Aquapteridospora fusiformis Z.L.Luo, D.F.Bao, H.Y.Su & K.D.Hyde
- Aquapteridospora hyalina J.Ma & Y.Z.Lu
- Aquapteridospora lignicola Jiao Yang, K.D.Hyde & Maharachch.
- Aquimonospora J.Yang & K.D.Hyde, 2019
- Arecacicola Joanne E.Taylor, J.Fröhlich & K.D.Hyde, 2001
- Argentinomyces N.I.Peña & Aramb., 1997
- Ascocollumdensa K.D.Hyde, V.M.Ranghoo & S.W.Wong, 2000
- Ascorhiza Lecht.-Trinka, 1931
- Ascoyunnania L.Cai & K.D.Hyde, 2005
- Assoa Urríes, 1944
- Aulospora Spegazzini, 1909
- Bactrodesmiastrum Hol.-Jech., 1984
- Bactrosphaeria Penzig & Saccardo, 1897
- Bombardiastrum Pat.
- Brenesiella H.Sydow, 1929
- Brunneosporopsis
- Byssotheciella Petrak, 1923
- Caleutypa Petrak, 1934
- Calosphaeriopsis Petrak, 1941
- Caudatispora J.Fröhlich & K.D.Hyde, 1995
- Ceratolenta M.Réblová, 2013
- Chaetoamphisphaeria K.Hara, 1918
- Ciliofusospora Bat. & J.L.Bezerra
- Clypeoceriospora Sousa da Câmara, 1946
- Clypeosphaerulina Sousa da Câmara, 1939
- Cryptoascus Petri, 1909
- Cryptomycina Höhn.
- Cryptophyllachora L.Kiss, Kovács & R.G.Shivas, 2018
- Cryptothamnium Wallr., 1842
- Cryptovalsaria Lar.N.Vassiljeva & S.L.Stephenson, 2007
- Cucurbitopsis Batista & Ciferri, 1957
- Dasysphaeria Spegazzini, 1912
- Delpinoella P.A.Saccardo, 1899
- Diacrochordon Petrak, 1955
- Dichotomella
- Digicatenosporium S.M.Leão, Gusmão & R.F.Castañeda
- Dryosphaera Jørg.Koch & E.B.G.Jones, 1989
- Erythromada Huhndorf, A.N.Miller, F.A.Fernández & Lodge, 2005
- Esfandiariomyces D.Ershad, 1985
- Flammispora U.Pinruan, J.Sakayaroj, K.D.Hyde & E.B.G.Jones, 2004
- Frondisphaeria
- Garethjonesia K.D.Hyde, 1992
- Gibberellulina E.de Sousa da Camara, 1950
- Gyrostromella Seeler, 1940
- Hanliniomyces H.A.Raja & C.A.Shearer, 2008
- Haplotrichella G.Arnaud, 1954
- Heliastrum Petrak, 1931
- Hyaloderma
- Hypotrachynicola Etayo, 2002
- Immersisphaeria Jaklitsch, 2007
- Iraniella Petrak, 1949
- Juncigena Kohlm., Volkm.-Kohlm. & O.E.Erikss., 1997
- Kaarikia
- Konenia K.Hara, 1913
- Kravtzevia Shvartsman, 1961
- Kurssanovia Kravtzev, 1955
- Lasiella Quél., 1875
- Lecythium H.Zukal, 1893
- Leptosacca H.Sydow, 1928
- Lyonella H.Sydow, 1925
- Menisporopascus
- Meringosphaeria
- Merugia C.T.Rogerson & G.J.Samuels, 1990
- Microcyclephaeria Batista, 1958
- Mirannulata Huhndorf, F.A.Fernández, A.N.Miller & Lodge, 2003
- Monostachys G.Arnaud, 1954
- Naumovela Kravtzev, 1955
- Neelakesa Udaiyan & V.S.Hosagoudar, 1992
- Neocryptospora Petrak, 1959
- Neolamya Theiss. & Syd.
- Neoskofitzia S.Schulzer von Müggenburg, 1880
- Neoskofitzia Schulzer
- Neothyridaria Petrak, 1934
- Nigromammilla K.D.Hyde & J.Fröhlich, 2003
- Oncopodiella G.Arnaud, 1954
- Ophiomassaria Jaczewski, 1894
- Paoayensis Cabanela, Jeewon & K.D.Hyde, 2007
- Paracapsulospora Konta & K.D.Hyde, 2016
- Paradiplococcium Hern.-Restr., J.Mena & Gené, 2017
- Paramicrodochium
- Pararhexoacrodictys Cantillo & Gusmão
- Pestalozzina (Sacc.) Sacc., 1895
- Phyllocelis H.Sydow, 1925
- Piminella G.Arnaud, 1954
- Plagiascoma Réblová & J.Fourn., 2015
- Platytrachelon M.Réblová, 2013
- Pleosphaeria Speg.
- Pogonospora
- Porodiscus Lloyd
- Proliferophorum G.N.Wang, H.Zhang & Senan., 2019
- Protocucurbitaria
- Psalidosperma
- Pseudoconlarium
- Pseudopatella Speg., 1891
- Pseudostanjehughesia J.Yang & K.D.Hyde, 2017
- Pumilus Viala & Marsais, 1934
- Pycnidiochaeta
- Rehmiomycella E.Müll.
- Rhamphosphaeria Kirschst.
- Rhizophila K.D.Hyde & E.B.G.Jones, 1989
- Rhopographella (Henn.) Sacc. & Trotter
- Rhynchosphaeria (Sacc.) Berl.
- Rimaconus
- Romellina Petrak, 1955
- Saccardoella Speg., 1879
- Sarcopyrenia Nyl.
- Sarcopyreniomyces
- Sartorya Vuill.
- Scharifia Petrak, 1955
- Scotiosphaeria Sivan.
- Selenosporella G.Arnaud ex MacGarvie
- Spermodermia Tode, 1790
- Sphaeromycetella G.Arnaud, 1954
- Sporoctomorpha J.V.Almeida & Sousa da Câmara, 1903
- Stearophora L.Mangin & P.Viala, 1905
- Stegophorella Petrak, 1947
- Stellosetifera
- Stenocladiella Marvanová & Descals
- Stomatogenella Petrak, 1955
- Stromatographium Höhn.
- Sulcospora Kohlm. & Volkm.-Kohlm., 1993
- Sungaiicola Fryar & K.D.Hyde, 2004
- Swampomyces Kohlm. & Volkm.-Kohlm., 1987
- Tamsiniella
- Thelidiella Fink, 1933
- Thyridella (P.A.Saccardo) P.A.Saccardo, 1895
- Torulopsis Oudem., 1903
- Trichoconium Corda, 1837
- Trichospermella Spegazzini, 1912
- Trichosphaeropsis Bat. & Nascim.
- Urospora Fabre, 1879
- Weinmannodora E.M.Fries, 1849
- Yongnicta A.V.Tobias & N.P.Maslova, 2021
- Ypsilonia J.H.Léveillé, 1846
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