子囊菌门（学名：Ascomycota）是真菌界中种类最多的一个门。顾名思义，本门成员的共同特征是在有性生殖相产生的后代孢子有一个保护囊，即子囊，这很像哺乳类胎儿都有一个羊膜囊保护一样。无论是酵母亚门的单细胞有性生殖，还是其余种属的多细胞有性生殖，无有例外。但保护孢子的子囊可以是永久的（persistant asci），也可以是稍纵即逝的（evanescent asci），以致在标本准备过程中往往消失而很难看见。子囊菌门成员通常被称为囊菌或子囊菌，是真菌界最大的门，超过64,000种 [2]，与担子菌门（Basidiomycota）一起构成了双核亚界（Dikarya）。
在有性生殖时，本门成员包括单细胞的酵母都能形成有盖或无盖的、棒状或卵形的子囊，通常在子囊内进行减数分裂后再进行有丝分裂，最终生成八个子囊孢子。在多细胞真菌，所有子囊均分散于菌丝之中，形成子囊果。子囊果还可以有包被（peridium），作为第二道防线，将所有的子囊保护起来。根据子囊果与包被之间的关系，子囊果又可分为子囊盘（apothecia）、闭被子囊果（cleistothecia）、酒囊子囊果（perithecia）、假包被子囊果（psudothecia）与裸被子囊果（gymnothecium）。裸被子囊果是裸被子囊菌科（Gymnoascaceae）的特征，他们的子囊成簇或散在分布于菌丝之中，没有闭被子囊果那样的全封闭式包被。[3]举世闻名的羊肚菌的子囊果呈蜂窝状，每个蜂窝眼其实就是一个子囊盘。
单细胞的酵母的子囊没有包被作第二道防线，总是裸露的，但它们仍然有子囊。
某些子囊菌门真菌也可以无性生殖，包括芽生、分裂或以分生孢子的方式，但这不是子囊菌门区别于其它真菌门的特征。无性生殖期本门真菌依环境温度不同还改变其形态，这一特性称为双态性，这些真菌称为双态性真菌。阿耶洛双态菌科的许多成员、组织胞浆菌、隐球菌等都属于这一类，它们在环境温度下以丝状真菌（霉菌）存在，吸入人体后在体内高温环境下变成单细胞酵母繁殖，给人类或动物造成急性播散性真菌病或慢性机会性感染。
子囊菌门的真菌可寄生、共生、腐生或兼性腐生。对人类有益的种类包括酵母菌、冬虫夏草、青霉菌、可以食用的羊肚菌等，也有很多种为植物致病菌。
子囊菌门是一类较高等的真菌，可分成以下三個亞門：
- 外囊菌亞門 (Taphrinomycotina)
- 粒毛盘菌纲 Neolectomycetes
- 肺孢子菌纲 Pneumocystidomycetes
- 裂殖酵母纲 Schizosaccharomycetes
- 外囊菌纲 Taphrinomycetes
- 酵母亞門 (Saccharomycotina)
- 盘菌亞門 (Pezizomycotina)
- 星裂菌纲 Arthoniomycetes
- 座囊菌綱 Dothideomycetes
- 散囊菌綱 Eurotiomycetes
- 蟲囊菌綱 Laboulbeniomycetes
- 茶渍纲 Lecanoromycetes
- 錘舌菌綱 Leotiomycetes
- 李基那地衣纲 Lichinomycetes
- 圓盤菌綱 Orbiliomycetes
- 盤菌綱 Pezizomycetes
- 糞殼菌綱 Sordariomycetes
- 刺盾炱纲 Chaetothyriomycetes
本门包括以下纲：
- Archaeorhizomycetes
- 星裂菌纲 Arthoniomycetes
- Candelariomycetes
- Coniocybomycetes
- 座囊菌綱 Dothideomycetes
- 散囊菌綱 Eurotiomycetes
- 地舌菌纲 Geoglossomycetes
- 蟲囊菌綱 Laboulbeniomycetes
- 茶渍纲 Lecanoromycetes
- 錘舌菌綱 Leotiomycetes
- 李基那地衣纲 Lichinomycetes
- 粒毛盘菌纲 Neolectomycetes
- Novakomycetes
- 圓盤菌綱 Orbiliomycetes
- 盤菌綱 Pezizomycetes
- 肺孢子菌纲 Pneumocystomycetes
- 酵母纲 Saccharomycetes
- Sareomycetes Beimforde, A.R. Schmidt, Rikkinen & J.K. Mitch. 2020
- 裂殖酵母纲 Schizosaccharomycetes
- 糞殼菌綱 Sordariomycetes
- 外囊菌纲 Taphrinomycetes
- Xylobotryomycetes
- Xylobotryales
- Cirrosporiaceae
- Cirrosporium S.J.Hughes, 1980
- Cirrosporium novae-zelandiae S.Hughes[4]
- Xylobotryaceae
- 木菌纲 Xylonomycetes Gazis & P. Chaverri 2012
- 纲的地位未定的目：
- Lahmiales
- Lauriomycetales
- Thelocarpales
- Triblidiales
- Vezdaeales
- Wiesneriomycetales
- 纲、目的地位未定的科：
- Coelomycetous
- Gylactaceae
- Hyphomycetous
- Pneumocystidaceae
- Porpidiaceaea
- Pyrenolaceae
- Sphaeriaceae
- 纲、目和科的地位未定的属：
- Abropelta B.C.Sutton, 1986
- Acanthoderma H.Sydow & P.Sydow, 1917
- Acaroconium Kocourková & D.Hawksworth, 2008
- Acarocybe Syd.
- Acarocybella M.B.Ellis, 1960
- Acarocybellina C.V.Subramanian, 1992
- Acarocybiopsis J.Mena, A.Hernández-Gutiérrez & Mercado, 1999
- Acaropeltis Petrak, 1937
- Achoropeltis H.Sydow, 1929
- Aciculariella G.Arnaud, 1954
- Acinula E.M.Fries, 1822
- Acontium A.P.Morgan, 1902
- Acremoniula G.Arnaud ex Cif., 1962
- Acrocylindrium Bonorden, 1851
- Acrodictiella R.K.Verma, N.Sharma & K.K.Soni, 2008
- Acrodictyella W.A.Baker & E.C.Partridge, 2001
- Acrodictyopsis P.M.Kirk
- Acrodontiella U.Braun & C.Scheuer, 1995
- 顶隔孢属 Acrophragmis Kiffer & Reisinger
- Acrospira Mont., 1857
- Acrosporium Bonord.
- Acrostaurus F.C.Deighton & K.A.Pirozynski, 1972
- Acrotheciella Koorders, 1907
- Actinochaete Ferro, 1907
- 射棒孢属 Actinocladium Ehrenb.
- Actinodochium H.Sydow, 1927
- 放线孢属 Actinonema Pers.
- Actinothyrella Edward, Kr.P.Singh, S.C.Tripathi, M.K.Sinha & Ranade, 1974
- Actinotrichum Wallroth
- Acumispora Matsush.
- Adendorfia G. Worobiec, F.H. Neumann & E. Worobiec 2017
- Adendorfia miocenica G.Worobiec, F.H.Neumann & E.Worobiec, 2017
- Adhogamina Subram. & Lodha 1964
- Aegerita Pers. 1794
- Aegeritella Baazy & J.Win., 1974
- Aegeritoidea Anon.
- Aenigmatospora R.F.Castañeda Ruiz, Saikawa, Guarro & Calduch, 1999
- Aerophyton Eschweiler, 1824
- Agaricodochium X.Liu, 1981
- Agarwalia D.P.Tiwari & P.D.Agrawal, 1974
- Agarwalomyces R.K.Verma & Kamal, 1987
- Agrabeeja C.V.Subramanian, 1995
- Agyriellopsis F.von Höhnel, 1903
- Ahmadia H.Sydow, 1939
- Ajrekarella M.N.Kamat & I.K.Kalani, 1964
- Alciphila H.Harmaja, 2002
- Alcornia J.S. Monteiro, S.M. Leão, Gusmão, P.M. Kirk & R.F. Castañeda 2017
- Alcornia sessilispora (Alcorn & P.M.Kirk) J.S.Monteiro, S.M.Leão, Gusmão, P.M.Kirk & R.F.Castañeda, 2017
- Aleurodomyces P.Buchner, 1912
- Algonquinia R.F.Castañeda Ruiz & W.B.Kendrick, 1991
- Allantophoma H.Klebahn, 1933
- Allomyces
- Allonema Syd.
- Alloneottiosporina Nag Raj, 1993
- Allothyriella Batista, Ciferri & Nascimento, 1959
- Allothyriopsis Batista, Ciferri & H.Maia, 1959
- Alpakesa Subram. & K.Ramakr., 1954
- Alpakesiopsis B.A.Abbas, B.C.Sutton, A.Ghaffar & A.Abbas, 2003
- Alveariospora M.da Silva, R.F.Castañeda-Ruíz, O.L.Pereira & R.W.Barreto, 2012
- Alveophoma Alcalde
- Alysidiopsis B.Sutton
- Amallospora Penz.
- Amblyosporium Fresen.
- Ambrosiaemyces Trotter, 1934
- Ameroconium U.Braun & M.O.Zhurbenko, 2013
- Amerodiscosiella M.L.Farr, 1961
- Amerodiscosiellina Bat. & Cavalc.
- Amerosporiella F.von Höhnel, 1916
- Amerosporiopsis Petrak, 1941
- Amerosympodula T.Matsushima, 1996
- Amoenodochium F.Peláez & R.F.Castañeda Ruiz, 1996
- Amoenomyces R.F.Castañeda, M.Saikawa & G.L.Hennebert, 1996
- Amphichaetella F.von Höhnel, 1916
- Amphiciliella F.von Höhnel, 1919
- Amphisphaerina F.von Höhnel, 1919
- Amphitrichum T.F.L.Nees, 1818
- Amphophialis R.F.Castañeda Ruiz, W.B.Kendrick & J.Guarro, 1998
- Ampullicephala R.F.Castañeda Ruiz, D.W.Minter & M.Stadler, 2009
- Ampullifera Deighton
- Ampulliferina B.Sutton
- Ampulliferinites R.M.Kalgutkar & L.Sigler, 1995
- Amylogalla
- Anacoronospora J.S.Monteiro, Gusmão & R.F.Castañeda
- Anaphysmene Bubák, 1906
- Anarhyma M.-H.Pei & Z.-W.Yuan, 1986
- Anaselenosporella G.P.Heredia, R.F.Castañeda & R.M.Arias, 2010
- Anaseptoidium R.F.Castañeda-Ruiz, G.A.Heredia & R.M.Arias-Mota, 2012
- Anasporidesmiella
- Anaverticicladus P.O.Costa, Malosso & R.F.Castañeda
- Ancoraspora Mig.Rodríguez, 1982
- Ancorasporella J.Mena Portales, A.Mercado Sierra & G.Heredia, 2017
- Andomyces
- Angiopomopsis F.von Höhnel, 1912
- Angulospora Sv.Nilsson
- Anisogenispora
- Anisospadicoides
- Annellodentimyces Matsushima, 1985
- Annellodochium F.C.Deighton, 1969
- Annellolacinia B.C.Sutton, 1964
- Annellophorella Subram., 1962
- Annellophragmia C.V.Subramanian, 1963
- Annellospermosporella P.R.Johnston, 1999
- Annellosympodia A.R.McTaggart, R.G.Shivas & U.Braun, 2007
- Anomomyces Höhn.
- Antennopsis R.Heim, 1952
- Anthina Fr.
- Anthoblastomyces Verona & Zardetta, 1954
- Anthracoderma Spegazzini, 1888
- Antimanoa H.Sydow, 1930
- Antromyces Fresen., 1850
- Anulohypha Ciferri, 1962
- Aoria Ciferri, 1962
- Aphanofalx B.C.Sutton, 1986
- Apiocarpella H.Sydow & P.Sydow, 1919
- Apiotypa Petrak, 1925
- Apocoryneum
- Apogloeum Petrak, 1954
- Aporellula B.C.Sutton, 1986
- Aposporella Thaxter, 1920
- 蛛丝孢属 Arachnophora Hennebert
- Arachnospora R.F.Castañeda, D.W.Minter & M.Camino-Vilaró, 2003
- Arborillus M.Muntañola-Cvetkovic & A.Gómez-Bolea, 1998
- Arborispora K.Ando
- Arcuadendron Sigler & J.W.Carmich., 1976
- Aristadiplodia M.Shirai, 1919
- Arnaudina A.Trotter, 1931
- Arthopyreniomyces
- Arthrobotryella Sibilia, 1928
- Arthrobotryomyces Bat. & J.L.Bezerra
- Arthrobotryum Ces.
- Arthrobotryum O.Rostr.
- Arthrocristula L.Sigler, M.T.Dunn & J.W.Carmichael, 1982
- Arthromoniliphora S.S.Silva, Gusmão & R.F.Castañeda
- Arthrosporium Sacc.
- Arthrotaeniolella L.B.Conc., M.F.O.Marques, J.S.Monteiro, Gusmão & R.F.Castañeda
- Arthrowallemia R.F.Castañeda Ruiz, D.García & J.Guarro, 1998
- Articularia F.von Höhnel, 1909
- Articulophora C.J.K.Wang & B.Sutton
- Artocreas M.J.Berkeley & Broome, 1875
- Asbolisia Spegazzini, 1918
- Asbolisiomyces Bat. & H.Maia
- Ascochytopsis Hennings, 1905
- Ascochytulina Petrak, 1922
- Ascohyalinospora
- Ascomauritiana V.M.Ranghoo & K.D.Hyde, 1999
- Ascomurispora
- Ashtaangam C.V.Subramanian, 1995
- Aspilaima Bat. & H.Maia
- Astelechia R.Ciferri, 1962
- Asterinothyriella Batista & Ciferri, 1959
- Asterinothyrium A.C.Batista, R.Ciferri & H.S.Maia, 1951
- Asteroconium H.Sydow & P.Sydow, 1903
- Asteroglobolus W.von Brackel, 2011
- Asteromidium Spegazzini, 1888
- Asteromyces Moreau, 1941
- Asteronectrioidea Cantournet, 1949
- Asteropsis Gonz.Fragoso, 1917
- Asteroscutula Petrak, 1948
- Asterostomopora A.C.Batista & H.Maia, 1960
- Asterostomopsis A.C.Batista, R.Ciferri & H.S.Maia, 1951
- Asterostomula Theiss.
- Asterostomulina A.C.Batista, J.L.Bezerra & H.S.Maia, 1964
- Astomella Thirumalachar, 1947
- Astrabomyces Bat.
- Astrodochium J.B.Ellis & Everhart, 1897
- Astronatelia A.C.Batista & H.Maia, 1962
- Ateleothylax M.Ota & M.Langeron, 1923
- Atractilina Dearness & Bartholomew, 1924
- Atractina Höhn.
- Atractobolus Tode
- Atractobolus Tode ex Palisot de Beauvois, 1805
- Atrosetaphiale Matsush.
- Aulographopsis Petrak, 1938
- Aurosphaeria S.J.Lee, S.A.Strobel, K.Eisenman, B.Geary, P.N.Vargas & S.A.Strobel, 2009
- Avesicladiella W.P.Wu, B.Sutton & Gange
- Avettaea F.Petrak & H.Sydow, 1927
- Azbukinia Lar.N.Vassiljeva, 1989
- Bacillopeltis Bat.
- Bacillospora
- Bactridium Kunze
- Bactrodesmiella M.B.Ellis
- Baculospora H.Zukal, 1887
- Badarisama Kunwar, J.B.Manandhar & J.B.Sinclair, 1986
- Baeotithis
- Bagyoaatgra
- Bahuchashaka C.V.Subramanian, 1978
- Bahukalasa C.V.Subramanian & K.V.Chandrashekara, 1979
- Bahusaganda C.V.Subramanian, 1994
- Bainieria G.Arnaud, 1952
- Bakerophoma Diedicke, 1916
- Balaniopsis P.M.Kirk, 1985
- Balanium Wallr.
- Barbarosporina A.Kirulis, 1942
- Barnettella D.Rao & P.R.Rao, 1964
- Bartheletia Arnaud, 1954
- Basauxia C.V.Subramanian, 1995
- Basididyma R.Ciferri, 1962
- Basramyces Abdullah, Abdulk. & Goos, 1989
- Batistina Peres
- Batistospora J.L.Bezerra & M.M.P.Herrera, 1964
- Beauveriphora Matsush., 1975
- Beccopycnidium F.L.Stevens, 1930
- Beejadwaya C.V.Subramanian, 1978
- Belainopsis Bat. & H.Maia
- Belemnospora P.M.Kirk
- Bellulicauda B.C.Sutton, 1967
- Beltramono R.Dubey, A.K.Pandey & C.Manoharachary, 2011
- Beltraniomyces Manohar., Agarwal & Rao
- Benekea Bat. & J.L.Bezerra
- Beniowskia Raciborski, 1900
- Benjaminia S.Ahmad, 1967
- Benjpalia C.V.Subramanian & D.J.Bhat, 1989
- Beverwijkella
- Bhadradriella D.Nagaraju, I.K.Kunwar & C.Manoharachary, 2011
- Bhadradriomyces S.Kumar, C.Manoharachary & I.K.Kunwar, 2009
- Bharatheeya D'Souza & Bhat
- Bhargavaella S.Singh & K.S.Srivastava, 1980?
- Bhatia W.A.Baker & G.A.Morgan-Jones, 2009
- Bibanasiella R.F.Castañeda Ruiz & W.B.Kendrick, 1991
- Bicoloromyces
- Biflagellospora T.Matsushima, 1975
- Biflagellosporella Matsush.
- Biflua Jørg.Koch & E.B.G.Jones, 1989
- Bilboque A.P.Viégas, 1960
- Bilgramia K.S.Panwar, D.K.Purohit & J.S.Chouhan, 1974
- Biligiriella
- Bimeris Petrak, 1949
- Bioconiosporium Bat. & J.L.Bezerra
- Birsiomyces F.Schaarschmidt, 1966
- Bisseomyces R.F.Castañeda, 1985
- Bitunicostilbe M.Morelet, 1971
- Bizzozeriella Spegazzini, 1888
- Blarneya D.L.Hawksworth, B.J.Coppins & P.W.James, 1980
- Blastocatena C.V.Subramanian & D.J.Bhat, 1989
- Blastoconium Ciferri, 1931
- Blastoderma B.Fischer & Brebeck, 1894
- Blastodictys M.B.Ellis, 1976
- Blastofusarioides T.Matsushima, 1996
- Blastoheterospora J.S.Monteiro, Gusmão & R.F.Castañeda
- Blastophorella Boedijn, 1937
- Blastophragma C.V.Subramanian, 1995
- Blastophragmia
- Blastotrichum Corda, 1838
- Blennoria Moug. & Fr.
- Blennoriopsis Petrak, 1920
- Blitrydium
- Blodgettia
- Blodgettiomyces
- Bomplandiella Spegazzini, 1886
- Botrydiella
- Botryodeorsum T.P.Devi, N.Mathur, Chowdhry, Jasvir Singh & O.Prakash, 2006
- Botryodiplodina Dias & Sousa da Câmara, 1954
- Botryogene Syd. & P.Syd., 1917
- Botryomonilia Goos & Pirozynski, 1975
- Botryomyces Greco, 1916
- Botryonipha Preuss, 1852
- Brachycarphium Berkeley, 1849
- Brachycephala J.S.Monteiro, Gusmão & R.F.Castañeda
- Brachydesmiella G.Arnaud ex S.Hughes
- Brachyhelicoon G.Arnaud, 1952
- Brachysporiellina Subram.
- Brachysporiopsis Yanna, W.H.Ho & K.D.Hyde, 2004
- Brefeldiopycnis Petrak & Ciferri, 1932
- Bresadolina J.Rick, 1928
- Briosia Cavara, 1888
- Broomeola Kuntze
- Brycekendrickia T.R.Nag Raj, 1973
- Brykendrickia
- Bryotrema
- Bulbilopycnis T.Matsushima, 1996
- Bulbocatenospora R.F.Castañeda & Iturr., 2000
- Bullaserpens A.C.Batista, J.L.Bezerra & W.A.Cavalcanti, 1965
- Bullimyces A.Ferrer, A.N.Miller, C.Sarmiento & C.A.Shearer, 2012
- Byssocladium Link, 1815
- Byssophytum Montagne, 1848
- Caducirostrum Punith. & Spooner
- Caenomyces E.W.Berry, 1916
- Caeruleoconidia Zhurb. & Pino-Bodas, 2017
- Calcarispora Marvanová & Marvan, 1963
- Calcarisporiella de Hoog
- Calceispora T.Matsushima, 1975
- Callistospora Petrak, 1955
- Callorites M.Fiore, 1932
- Callosisperma Preuss, 1855
- Calocline H.Sydow, 1939
- Calongeomyces D.Hawksw. & Etayo, 2011
- Calongia D.Hawksw. & Etayo
- Camaropycnis E.K.Cash, 1945
- Camarosporellum Tassi, 1902
- Camarosporiopsis Abbas, B.Sutton & Ghaffar, 2000
- Camarosporulum Tassi, 1902
- Camposporidium Nawawi & Kuthub.
- Camptomeris Syd., 1927
- Camptosporium Link
- Candelosynnema K.D.Hyde & K.A.Seifert, 1992
- Capillaria Pers.
- Capitorostrum Batista, 1957
- Capnogoniella Batista & Ciferri, 1963
- Caproniella Berlese, 1896
- Capsicumyces Gamundí, Aramb. & Giaiotti
- Carmichaelia N.D.Sharma, 1980
- Carnegieispora J.Etayo & F.Berger, 2009
- Carnia Bat.
- Carrismyces R.F.Castañeda Ruiz & G.Heredia, 2000
- Cashhickia T.N.Taylor, M.Krings, J.Galtier & N.Dotzler, 2012
- Casparyotorula
- Castanedaea W.A.Baker & Partridge, 2001
- Catenella A.C.Batista & E.P.Peres, 1963
- Catenocuneiphora Matsushima, 2003
- Catenophora Luttrell, 1940
- Catenophoropsis T.R.Nag Raj & W.B.Kendrick, 1988
- Catenospegazzinia Subramanian, 1991
- Catenosubulispora Matsushima, 1971
- Catenosynnema Kodsueb, E.H.C.McKenzie, W.H.Ho, K.D.Hyde, P.Lumyong & S.Lumyong, 2007
- Catenulaster Bat. & C.A.A.Costa
- Catenuloxyphium Bat., Nascim. & Cif.
- Catinopeltis Batista & C.A.A.Costa, 1957
- Cecidiomyces U.Braun & M.P.Zhurbenko, 2012
- Ceeveesubramaniomyces Pratibha, K.D.Hyde & Bhat, 2005
- Cellulosporium C.H.Peck, 1879
- Cephalodochium Bonorden, 1851
- Cephalophorum Nees
- Cephalothecoidomyces
- Ceracea Cragin
- Ceratohirudispora R.Kar, B.D.Mandaokar & R.K.Kar, 2010
- Ceratophorum Sacc.
- Ceratopycnis Höhn., 1915
- Ceratospermum P.Micheli, 1729
- Cercosperma G.Arnaud ex B.C.Sutton & C.H.Hodges Jr., 1983
- Cerotocystis
- Cervichlamydospora
- Ceuthosira Petrak, 1924
- Ceuthosporella Petrak & H.Sydow, 1923
- Chaetantromycopsis H.P.Upadhyay, Cavalc. & A.A.Silva
- 毛内隔孢属 Chaetendophragmia Matsush.
- Chaetendophragmiopsis B.C.Sutton & C.S.Hodges, 1978
- Chaethomites L.Pampaloni, 1902
- Chaetobasidiella F.von Höhnel, 1918
- Chaetoblastophorum G.Morgan-Jones, 1977
- Chaetocomis
- Chaetoconidium H.Zukal, 1887
- Chaetocytostroma Petrak, 1920
- Chaetodiplis F.E.Clements, 1931
- Chaetodiplodina Spegazzini, 1910
- Chaetopeltaster K.Katumoto, 1975
- Chaetopeltiopsis K.Hara, 1913
- Chaetophiophoma Spegazzini, 1910
- Chaetophomella Speg.
- Chaetopsis Grev.
- Chaetosclerophoma Petrak, 1924
- Chaetoseptoria Tehon, 1937
- Chaetospermopsis K.Katumoto & Y.Harada, 1979
- Chaetospermum Sacc.
- Chaetostroma Corda
- Chaetostromella P.A.Karsten, 1895
- Chaetothyriolum Spegazzini, 1919
- Chaetotrichum
- Chaetozythia P.A.Karsten, 1888
- Chalarodendron C.J.K.Wang & B.C.Sutton, 1984
- Chalarodes McKenzie, 1991
- Characonidia Bat. & Cavalc.
- Chardonia Ciferri, 1930
- Charomyces K.A.Seifert, 1987
- Charrinia Viala & Ravaz, 1894
- Chasakopama C.Manoharachary, G.Bagyanarayana, N.K.Rao & I.K.Kunwar, 2009
- Cheilaria Lib.
- Cheiroidea W.A.Baker & G.A.Morgan-Jones, 2009
- Cheiromyceopsis Á.Mercado Sierra & J.Mena Portales, 1988
- Cheiropolyschema T.Matsushima, 1980
- Chiastospora Riess, 1852
- Chikaneea B.C.Sutton, 1973
- Chionomyces F.C.Deighton & K.A.Pirozynski, 1972
- Chithramia T.R.Nag Raj, 1988
- Chlamydomyces Bainier
- Chlamydopsis V.Holubová-Jechová & R.F.Castañeda, 1986
- Chlamydorubra K.B.Deshpande & K.S.Deshpande, 1966
- Chlamydospora R.Kar, B.D.Mandaokar & R.K.Kar, 2009
- Chlorolichenomycites
- Choanatiara F.DiCosmo, 1984
- Chondropodiola Petrak & Ciferri, 1932
- Choreospora O.Constantinescu & R.Santesson, 1987
- Chromosporium Corda
- Chrysachne Ciferri, 1938
- Chrysalidopsis R.L.Steyaert, 1961
- Chryseidea S.Onofri, 1981
- Chuppia F.C.Deighton, 1965
- Cicadocola Brain, 1923
- Ciferria Fragoso, 1925
- Ciferriella Petrak, 1930
- Ciferrina Petrak, 1932
- Ciferriopeltis A.C.Batista & H.Maia, 1965
- Ciliochora F.von Höhnel, 1919
- Ciliophora Petr., 1929
- Ciliophorella Petr.
- Ciliospora
- Ciliosporella Petr., 1927
- Circinoconiopsis A.Hernández Gutiérrez, 2013
- Circinoconis Boedijn, 1942
- Circinoconites
- Cissococcomyces Brain, 1923
- Civisubramaniania B.P.R.Vittal & M.Dorai, 1986
- Cladoconidium R.J.Bandoni & K.Tubaki, 1985
- Cladographium Peyronel, 1918
- Cladoniicola Diederich, Van den Boom & Aptroot
- Cladosphaera Dumortier, 1822
- Cladosporiella Deighton, 1965
- 类枝孢属 Cladosporiopsis S.C.Ren & X.G.Zhang, 2010
- Cladosporiopsis ovata S.C.Ren & X.G.Zhang
- Cladosporiumsporinites
- Cladosporothyrium
- Clasteropycnis Bat. & Cavalc.
- Clathroconium R.A.Samson & H.C.Evans, 1982
- Clathrosphaera Zalewski, 1888
- Clauzadeomyces Diederich, 1994
- Clavariana Nawawi, 1976
- Clavascina K.Beneš, 1961
- Clavisporum G.F.Sepúlveda, R.C.Pereira-Carvalho & J.C.Dianese, 2008
- Cleistocystis Sousa da Câmara, 1931
- Cleistophoma Petr. & Syd.
- Clithramia Nag Raj, 1988
- Clypeochorella Petrak, 1923
- Clypeopatella F.Petrak, 1942
- Clypeophialophora Bat. & Peres
- Clypeopycnis Petrak, 1925
- Clypeoseptoria F.Stevens & P.A.Young
- Clypeostagonospora Punith.
- Coccidophthora H.Sydow & P.Sydow, 1913
- Coccogloeum Petrak, 1955
- Coccospora Wallroth, 1833
- Coccularia Corda, 1829
- Codonmyces Calat. & Etayo, 1999
- Coelographium (P.A.Saccardo) E.Gäumann, 1920
- Coelosporium Link, 1824
- Colemaniella V.Agnihothrudu, 1974
- Coleocarpon S.P.Stubblefield, T.N.Taylor, C.E.Miller & G.T.Cole, 1983
- Coleodictyospora Charles, 1929
- Coleoseptoria Petrak, 1940
- Collacystis Kunze, 1827
- Collarium Link, 1809
- Collecephalus J.A.Spencer, 1972
- Colletoconis G.S.de Hoog & H.A.van der Aa, 1978
- Colletosporium Link, 1824
- Collodochium F.von Höhnel, 1902
- Collonema W.B.Grove, 1886
- Collostroma Petrak, 1947
- Colpomella F.von Höhnel, 1926
- Columnodomus Petrak, 1941
- Columnophora Bubák & Vleugel, 1916
- Columnothyrium Bubák, 1916
- Comatospora K.A.Pirozynski & R.A.Shoemaker, 1971
- Comocephalum H.Sydow, 1939
- Confertopeltis Tehon, 1933
- Coniambigua Etayo & Diederich, 1995
- Conioscyphopsis T.K.Goh & K.D.Hyde, 1998
- Coniosporiopsis Spegazzini, 1918
- Coniothyriella Spegazzini, 1889
- Coniothyris
- Conjunctospora S.-I.Udagawa & S.Uchiyama, 1999
- Conostoma Bat. & J.L.Bezerra
- Conostomatium A.B.Doweld, 2013
- Consetiella Holubová-Jechová & Mercado, 1982
- Cooksonomyces H.J.Swart & D.A.Griffiths, 1974
- Corallinopsis J.Lagarde, 1917
- Corallodendron
- Corallomorpha Opiz, 1856
- Corallomyces E.M.Fries, 1849
- Coremiella Bubák & Krieg.
- Corethropsis Corda, 1839
- Corethrostroma Klebahn, 1933
- Cornucopiella Höhn.
- Cornutostilbe K.A.Seifert, 1990
- Coronium Bonorden, 1864
- Coronosporidium
- Corynecercospora V.K.Pal, M.Akhtar, N.Ahmad, Kamal & D.K.Agarwal, 2006
- Coryneliella Hariot & P.A.Karsten, 1890
- 小棒孢属 Corynesporella Munjal & H.S.Gill, 1961
- Corynesporina Subramanian, 2009
- Corynodesmium Wallroth, 1828
- Cosmariospora P.A.Saccardo, 1880
- Costanetoa A.C.Batista & Bezerra, 1963
- Coutourea Castagne, 1845
- Couturea Castagne, 1845
- Craneomyces G.Morgan-Jones, R.C.Sinclair & A.Eicker, 1987
- Craspedodidymella F.R.Barbosa, R.F.Castañeda & Gusmão
- Cremasteria Meyers & Moore
- Creodiplodina Petrak, 1957
- Creonecte Petrak, 1949
- Creoseptoria Petrak, 1937
- Creothyriella Batista & C.A.A.Costa, 1957
- Cribropeltis Tehon, 1933
- Crinigera I.Schmidt, 1969
- Cristidium R.Santesson, 1952
- Cristula Chenantais, 1920
- Crousobrauniella
- Crustodiplodina Punith.
- Cryptoceuthospora Petrak, 1921
- 隱球菌屬 Cryptococcus
- Cryptocoryneopsis B.C.Sutton, 1980
- Cryptomela
- Cryptomycella Höhn.
- Cryptosporium Kunze
- Cryptumbellata S.-I.Udagawa & S.Uchiyama, 1999
- Ctenosporium R.Kirschner, 2006
- Cubasina R.F.Castañeda
- Cucurbitariaceites R.K.Kar, R.Y.Singh & S.C.D.Sah, 1972
- Cumulospora I.Schmidt, 1985
- Curculiospora Arnaud, 1954
- Curucispora Matsush., 1981
- Curvidigitus Sawada, 1943
- Curvulariopsis M.B.Ellis, 1961
- Cuticularia Ducomet, 1907
- Cyanolichenomycites
- Cyanopatella Petrak, 1949
- Cyclomarsonina Petrak, 1965
- Cylindrogloeum Petrak, 1941
- Cylindromyces C.Manoharachary, D.K.Agarwal & N.K.Rao, 2004
- Cylindronema Schulzer, 1866
- Cylindrophoma (Berlese & Voglino) von Höhnel, 1925
- Cylindrophora Bonord.
- Cylindrotheca Bonorden, 1864
- Cylindrothyrium R.Maire, 1907
- Cylindroxyphium A.C.Batista & R.Ciferri, 1963
- Cymbothyrium Petrak, 1947
- Cyrtocnon Link ex Reichenbach, 1828
- Cystidiella Malan, 1943
- Cystoporina
- Cystothyrium Spegazzini, 1888
- Cytodiscula Petrak, 1931
- Cytogloeum Petr.
- Cytonaema Höhn., 1914
- Cytoplacosphaeria Petr., 1920
- Cytopleastrum B.A.Abbas, B.C.Sutton, A.Ghaffar & Abbas, 2004
- Cytosphaera Died., 1916
- Cytosporella Sacc., 1884
- Cytosporina Sacc.
- Cytosporium Sacc.
- Cytostagonospora Bubák, 1916
- Dacrydium Link, 1809
- Dacrymycella Bizzozero, 1885
- Dactylifera J.L.Alcorn, 1987
- Dactylosporium Harz
- Dasysticta Spegazzini, 1912
- Dasystictella Höhn.
- Davisiella Petrak, 1924
- Dearnessia Bubák, 1916
- Deichmannia V.Alstrup & D.L.Hawksworth, 1990
- Delortia Patouillard & Gaillard, 1888
- Dendrina E.M.Fries, 1825
- Dendrodomus Bubák, 1915
- Dendrographiella V.Agnihothrudu, 1972
- Dendrographium Massee, 1892
- Dendroseptoria Bausá Alcalde, 1948
- Dendrostilbe Dearness, 1924
- Dendryphiosphaera Lunghini & Rambelli
- Dennisographium M.A.Rifai, 1977
- Denticularia Deighton
- Dentocircinomyces R.F.Castañeda Ruiz & W.B.Kendrick, 1990
- Derexia Narasimhan, 1970
- Dermatoidium Stautz
- Descalsia A.Roldán & M.Honrubia, 1989
- Desmazierella M.L.Crié, 1878
- Desmidiospora Thaxter, 1891
- Desmotrichuym
- Dexhowardia J.J.Taylor, 1970
- Diaboliumbilicus I.Hino & Katumoto, 1955
- Diademospora B.E.Söderstr. & Bååth, 1979
- Dialaceniopsis A.C.Batista, 1959
- Diaphanium E.M.Fries, 1836
- Diarimella
- Dicellispora Sawada, 1944
- Dichelostroma Batista & Peres, 1963
- Dicholobodigitus G.P.White & W.I.Illman, 1988
- Dichotomophthora Mehrlich & Fitzpatrick ex P.N.Rao, 1966
- Dichotomophthora Mehrlich & Fitzpatrick, 1935
- Dichotomophthoropsis M.B.Ellis, 1971
- Dichotophora S.R.Whitton, K.D.Hyde & E.H.C.McKenzie, 2012
- Dicoccum Corda
- Dicranocladium Sousa da Câmara, 1931
- Dictyoaquaphila J.S.Monteiro, L.B.Conc., M.F.O.Marques, Gusmão & R.F.Castañeda
- Dictyoarthrinopsis Batista & Ciferri, 1958
- Dictyoceratosporella
- Dictyochorina Chardón, 1932
- Dictyodesmium S.J.Hughes, 1951
- Dictyomykus R.Kar, B.D.Mandaokar & R.K.Kar, 2009
- Dictyophrynella Bat. & Cavalc.
- Dictyopolyschema M.B.Ellis
- Dictyorostrella U.Braun, 1999
- Dictyospiropes M.B.Ellis, 1976
- Dictyostroma
- Dictyotrichocladium Fiuza, Gusmão & R.F.Castañeda
- Didymochaeta Sacc. & Ellis
- Didymochaetina A.C.Batista & J.L.Bezerra, 1965
- Didymopsis Sacc. & Marchal
- Didymosamarospora T.W.Johnson & H.S.Gold, 1957
- Didymosphaerites M.Fiore, 1932
- Didymosporiella Traverso & Migliardi, 1911
- Didymosporina Höhn., 1916
- Didymosporium Nees
- Didymosporium Saccardo, 1880
- Didymothozetia E.Rangel, 1915
- Didymotrichella Arnaud, 1954
- Diedickea H.Sydow & P.Sydow, 1913
- Digitomyces A.Mercado Sierra, M.Calduch & J.Gené, 2003
- Digitoramispora R.F.Castañeda Ruiz & W.B.Kendrick, 1990
- Dimastigosporium L.Faurel & G.Schotter, 1965
- Dimorphomyces Omoifo, 1997
- Dinemasporiella Spegazzini, 1910
- Dionysia G.Arnaud
- Diplanes
- Diplocladiella G.Arnaud ex M.B.Ellis
- Diplodiella (P.Karst.) Sacc.
- Diplodinis F.E.Clements, 1931
- Diplodinula Tassi, 1902
- Diplodites Teterenikora-Babayan & Taslakhchian ex R.M.Kalgutkar, E.M.V.Nambudiri & W.D.Tidwell, 1993
- Diplopeltis Pass.
- Diploplenodomus Diedicke, 1912
- Diplorhynchus G.Arnaud, 1952
- Diplosporonema Höhn., 1917
- Diplozythia Bubák
- Diplozythiella Diedicke, 1916
- Dirimosperma Preuss, 1855
- Discoascina K.Beneš, 1961
- Discocolla Prillieux & Delacroix, 1894
- Discomycetoidea T.Matsushima, 1993
- Discophora
- Discosiellina Subramanian & K.R.C.Reddy, 1972
- Discosporina Höhn.
- Discosporium (Sacc. & P.Syd.) E.R.Farr
- Discotheciella Syd. & P.Syd.
- Discothecium
- Discozythia Petrak, 1922
- Dissitimurus E.G.Simmons, M.R.McGinnis & M.G.Rinaldi, 1987
- Dissoacremoniella Kirilenko, 1970
- Distobactrodesmium
- Distoceratosporella J.S.Monteiro, Gusmão & R.F.Castañeda
- Distophragmia
- Ditangifibula G.C.Adams, 1996
- Divinia Ciferri, 1955
- Dokmaia I.Promputtha et al., 2003
- Domingoella Petr. & Cif.
- Dontuzia L.D.Gómez Pignataro, 1973
- Dothideodiplodia K.E.Murashkinski, 1927
- Dothiopsis P.A.Karsten, 1884
- Dothiorellina Bubák, 1911
- Dothioropsis H.Riedl, 1974
- Drechsleromyces C.V.Subramanian, 1978
- Drudeola O.Kuntze, 1891
- Drumopama C.V.Subramanian, 1957
- Dualomyces T.Matsushima, 1987
- Dubiocarpon S.A.Hutchinson, 1955
- Dumortieria Westend.
- Duosporium K.S.Thind & Rawla, 1961
- Dwayabeeja Subram.
- Dwayabeejaesporonites
- Dwayaloma C.V.Subramanian, 1957
- Dwayalomella Brisson, Piroz. & Pauzé, 1975
- Dwibahubeeja N.Srivastava, A.K.Srivastava & Kamal, 1995
- Dwibeeja C.V.Subramanian, 1995
- Dwiroopella C.V.Subramanian & J.Muthumary, 1986
- Dyonisia
- Ebollia D.W.Minter & T.S.Caine, 1980
- Echinochaetomium
- Echinochondrium Samson & Van der Aa, 1975
- Echinoconidiophorum R.C.Pereira-Carvalho & J.C.Dianese, 2009
- Ectostroma Fr.
- Edmundmasonaesporites
- Eiona Kohlm., 1968
- Elachopeltella Bat. & Cavalc.
- Elachopeltis Syd.
- Elaeodema H.Sydow, 1922
- Elattopycnis Bat. & Cavalc.
- Ellisembiopsis Santa Izabel & Gusmão
- Ellisiella A.C.Batista, 1956
- Ellismarsporium R.F.Castañeda & X.G.Zhang
- Ellobiopsis
- Elotespora R.F.Castañeda Ruiz & G.H.Abarca, 2010
- Embryonispora
- Enantioptera Descals
- Enantiothamnus Pinoy, 1911
- Enchnosphaeria
- Endobotrya Berkeley & M.A.Curtis, 1874
- Endobotryella F.von Höhnel, 1909
- Endochaetophora J.F.White & T.N.Taylor, 1988
- Endocolium H.Sydow, 1937
- Endoconospora Gjaerum
- Endocoryneum Petrak, 1922
- Endogenospora R.F.Castañeda Ruiz, O.Morillo & D.W.Minter, 2010
- Endophlaea Cooke
- Endophoma A.Tsuneda & M.L.Davey, 2011
- Endophragmia Duvernoy & Maire
- Endophragmiopsis M.B.Ellis, 1966
- Endoplacodium Petrak, 1949
- Endoramularia Petrak, 1923
- Endosporoideus W.H.Ho, Yanna, K.D.Hyde & Goh, 2005
- Endostilbum Malencon
- Endotrichum Corda, 1838
- Endozythia F.Petrak, 1959
- Enerthidium H.Sydow, 1939
- Engelhardtiella A.Funk, 1973
- Enridescalsia R.F.Castañeda & Guarro, 1998
- Enterobotryum Preuss, 1853
- Enthallopycnidium F.Stevens, 1925
- Entoderma Hanula, Andreadis & M.Blackwell, 1991
- Eoetvoesia Schulzer, 1866
- Eomelanomyces C.Beimforde, H.Dörfelt & A.R.Schmidt, 2011
- Eosaccharomyces T.N.Hermann, 1979
- Epaphroconidia V.Calatayud & V.Atienza, 1995
- Ephelidium C.W.Dodge & E.D.Rudolph, 1955
- Ephelidium Spegazzini, 1920
- Epichysium Tode
- Epiclinium E.M.Fries, 1849
- Epicoccospora U.Budathoki & S.K.Singh, 1995
- Epidochiopsis P.A.Karsten, 1892
- Episporogoniella U.Braun
- Epistigme Syd.
- Erebonema F.A.Roemer, 1845
- Eriomycopsis Spegazzini, 1910
- Eriosporopsis Petrak, 1947
- Eriothyrium Spegazzini, 1888
- Erispora Patouillard, 1922
- Erysiphopsis Spegazzini, 1910
- Esdipatilia C.H.Phadke, 1981
- Euhaplosporella Petrak & Sydow, 1926
- Eulasmeniella Petrak & Sydow, 1927
- Eurasina G.R.W.Arnold, 1970
- Eurotiopsis P.A.Karsten, 1889
- Eustegia
- Evanidomus Caballero, 1941
- Eversia J.L.Crane & J.D.Schoknecht, 1977
- Excipularia Sacc.
- Exophoma Weedon, 1926
- Exosporella F.von Höhnel, 1912
- Exosporodiella
- Fairmaniella F.Petrak & H.Sydow, 1927
- Falciascina K.Beneš, 1961
- Farriolla Norman, 1885
- Farriollomyces
- Favomicrosporon T.Benedek, 1967
- Favostroma B.C.Sutton & E.M.Davison, 1983
- Feltgeniomyces Dieder.
- Fenestroconidia V.Calatayud & J.Etayo, 1999
- Feracia Rolland, 1905
- Fissuricella
- Flabellocladia A.Nawawi, 1985
- Flabellospora Alas.
- Flahaultia
- Flahaultiella K.A.Seifert, 2009
- Flosculomyces B.Sutton
- Foveostroma DiCosmo, 1978
- Frigidispora K.D.Hyde & Goh
- Fuckelia Niessl, 1875
- Fujimyces Minter & Caine
- Fuligomyces G.Morgan-Jones & Kamal, 1984
- Fumago Pers., 1822
- Fumagopsis Speg., 1910
- Funicularius K.K.Baker & M.Zaim, 1979
- Fusamen (Sacc.) P.Karst.
- Fusariopsis Parreiras Horta, 1919
- Fuscophialis B.C.Sutton, 1977
- Fusella P.A.Saccardo, 1886
- Fusicatena K.Matsushima & T.Matsushima, 1996
- Fusicladina Arnaud, 1952
- Fusisporella Spegazzini, 1910
- Fusoma Corda
- Fusticeps J.Webster & R.A.Davey
- Gaeumanniella Petrak, 1952
- Galacatomyces
- Gallaicolichen Sérusiaux & Lücking, 2007
- Galloea V.Alstrup & U.Søchting, 2009
- Gamosporella Spegazzini, 1888
- Gampsonema T.R.Nag Raj, 1975
- Gangliophora C.V.Subramanian, 1992
- Gangliostilbe Subram. & Vittal
- Garnaudia A.Borowska, 1977
- Gaubaea Petrak, 1942
- Gelatinocrinis T.Matsushima, 1995
- Gelatinopycnis B.J.Dyko & B.C.Sutton, 1979
- Geleenites S.J.Dijkstra, 1949
- Geminella J.Schröt.
- Geminoarcus K.Ando, 1993
- Gemmophora Schkorbatow, 1912
- Gemmulina Descals & Marvanová
- Geniopila Marvanová & Descals, 1985
- Geohypha
- Geotrichella Arnaud, 1954
- Gerulajacta Preuss
- Gilmaniella G.L.Barron, 1964
- Giulia F.Tassi, 1904
- Glabrotheca Chardón, 1939
- Glaphyriopsis B.C.Sutton & I.G.Pascoe, 1987
- Glenosporopsis O.M.Fonseca, 1943
- Glioannellodochium T.Matsushima, 1989
- Glioblastocladium T.Matsushima, 1989
- Gliodendron
- Gliophragma C.V.Subramanian & B.C.Lodha, 1964
- Gliostroma Corda, 1837
- Globoconidiopsis G.F.Sepúlveda, R.C.Pereira-Carvalho & J.C.Dianese, 2009
- Globoconidium G.F.Sepúlveda, R.C.Pereira-Carvalho & J.C.Dianese, 2009
- Globosopyreno Lloyd, 1923
- Globuliroseum S.B.Sullia & K.R.Khan, 1984
- Gloeocoryneum Weindlmayr, 1964
- Gloeodes Colby
- Gloeosporiella Cavara, 1892
- Gloiosphaera F.von Höhnel, 1902
- Glutinium Fr.
- Glycophila
- Glycyphila Montagne, 1851
- Gnominia
- Godal Adanson, 1763
- Gonatophragmiella R.Kumar, A.N.Rai & Kamal, 1994
- Gonatophragmiopsis Gusmão, J.S.Monteiro & R.F.Castañeda
- Gonatorrhodum Corda, 1839
- Gonidiomyces E.A.Vainio, 1921
- Gonyella H.Sydow & P.Sydow, 1919
- Goosiella G.Morgan-Jones, Kamal & R.K.Verma, 1986
- Goosiomyces N.K.Rao & C.Manoharachary, 1989
- Grallomyces F.L.Stevens, 1918
- Granmamyces
- Granularia P.A.Saccardo & J.B.Ellis ex P.A.Saccardo, 1882
- Graphidium
- Graphiothecium Fuckel
- Groveolopsis Boedijn, 1951
- Guarroa
- Guceviczia
- Guedea Rambelli & Bartoli
- Gueguenia
- Gymnodochium Massee & E.S.Salmon, 1902
- Gymnosporium Corda
- Gymnoxyphium Cif., Bat. & I.J.Araujo
- Gyroceras
- Gyrophthorus Hafellner & Sancho
- Habrostictis Clem.
- Hadronema H.Sydow & P.Sydow, 1909
- Hadrosporium H.Sydow, 1938
- Halysiomyces E.G.Simmons, 1981
- Halysium Corda, 1837
- Hansfordiopeltis Bat. & C.A.A.Costa
- Hansfordiopeltopsis M.L.Farr, 1986
- Hapalosphaeria Syd.
- Haplariella Syd. & P.Syd.
- Haplariopsis Henn.
- Haplariopsis Oudem., 1903
- Haplobasidion Erikss., 1889
- Haplolepis H.Sydow, 1925
- Haplosporidium Spegazzini, 1912
- Haplosporium Mont.
- Hapsidascus Kohlm. & Volkm.-Kohlm., 1991
- Haptocara C.Drechsler, 1975
- Harpagomyces Wilczynski, 1911
- Harpographium Sacc.
- Harposporella F.von Höhnel, 1925
- Hawksworthia Manoharachary, N.K.Rao, D.K.Agarwal & Kunwar, 2004
- Hawksworthiana Unger
- Hawksworthiella
- Heimiella Racovitza, 1959
- Heimiodora Nicot, 1960
- Helensiella D.W.Minter & R.F.Castan
- Helhonia B.C.Sutton, 1980?
- Helicoceras Linder, 1931
- Helicofilia Matsush.
- Helicogermslitia
- Helicogoosia V.Holubová-Jechová, 1991
- Helicominopsis F.C.Deighton, 1960
- Helicomycopsis
- Helicomyxa
- Helicoonites R.M.Kalgutkar & L.Sigler, 1995
- Helicorhoidion S.Hughes, 1958
- Helicosingula P.S.van Wyk, W.F.O.Marasas, S.W.Baard & P.S.Knox-Davies, 1985
- Helicosporella Arnaud, 1954
- Helicosporina Arnaud, 1954
- Helicosporina G.Arnaud ex Rambelli, 1960
- Helicostilbe F.von Höhnel, 1902
- Helicothyrium I.Hino & K.Katumoto, 1960
- Helicotrichum
- Helicoubisia Lunghini & Rambelli, 1979
- Heliscina Marvanová
- Helminthophora Bonord.
- Helminthosporiomyces G.F.Sepúlveda, R.C.Pereira-Carvalho & J.C.Dianese, 2009
- Helminthosporiopsis Spegazzini, 1880
- Hemialysidium Holubová-Jechová, 1992
- Hemicorynesporella Subramanian, 1992
- Hemidothis H.Sydow & P.Sydow, 1916
- Hemisphaeropsis Petrak, 1947
- Hendersoniella (Sacc.) Tassi
- Hendersonina E.J.Butler
- Hendersonulina Petrak, 1951
- Hendersonulina Tassi, 1902
- Henfellra
- Henicospora P.M.Kirk & B.Sutton
- Hennebertia M.Morelet, 1969
- Herposira H.Sydow, 1938
- Herreromyces R.F.Castañeda Ruiz & W.B.Kendrick, 1991
- Heterocephalum Thaxter, 1903
- Heteroceras Sacc.
- Heteroconidium Sawada, 1944
- Heteroseptata E.F.Morris, 1972
- Heterosporiopsis Petrak, 1950
- Heterostomum E.M.Fries
- Heuflera Bail, 1860
- Hexacladium D.L.Olivier, 1983
- Hilidicellites
- Himantia Pers.
- Hinoa Hara & Hino, 1961
- Hirudinaria Cesati, 1856
- Holubovaea A.Mercado, 1983
- Holubovaniella R.F.Castañeda, 1985
- Homalopeltis Bat. & Valle
- Honeggeriella K.K.S.Matsunaga, R.A.Stockey & A.M.F.Tomescu, 2017
- Hormiactella Sacc.
- Hormiactis Preuss
- Hormiscioideus M.Blackwell & J.W.Kimbrough, 1979
- Hormisciopsis Sumstine, 1914
- Hormocephalum H.Sydow, 1939
- Hormocladium F.von Höhnel, 1923
- Hormococcus Preuss
- Hormodendron
- Hormodochium (Saccardo) Trotter, 1921
- Hormographis J.Guarro, L.Punsola & J.A.von Arx, 1986
- Hughesinia J.C.Lindquist & I.J.Gamundi, 1970
- Hyalocamposporium Révay & J.Gönczöl, 2007
- Hyalocephalotrichum D.Nagaraju, I.K.Kunwar, G.Sureshkumar & C.Manoharachary, 2011
- Hyalocladium Mustafa, 1977
- Hyalodermella Spegazzini, 1918
- Hyalodictyum Woronichin, 1916
- Hyalohelicomina T.Yokoyama, 1974
- Hyalopleiochaeta R.F.Castañeda, J.Guarro & J.Cano, 1996
- Hyalosynnema T.Matsushima, 1975
- Hyalothyridium Tassi, 1900
- Hyalotiastrum B.A.Abbas, B.C.Sutton, A.Ghaffar & Abbas, 2003
- Hydnopsis Tulasne & C.Tulasne, 1865
- Hydromelitis A.Ferrer, A.N.Miller, C.Sarmiento & C.A.Shearer, 2012
- Hydrometrospora J.Gönczöl & Á.Révay, 1985
- Hymenella Fr.
- Hymeniopeltis Bat.
- Hymenobactron (P.A.Saccardo) F.von Höhnel, 1916
- Hymenula Fr.
- Hyperus F.L.Stevens, 1927
- Hypha Pers., 1822
- Hyphasma Rebentisch ex Nocca & Balbis, 1821
- Hyphochlaena Ciferri, 1962
- Hyphodiscosia Lodha & K.R.C.Reddy
- Hyphodiscosioides T.Matsushima, 1993
- Hyphopolynema Nag Raj
- Hyphostereum Patouillard, 1892
- Hyphothyrium B.C.Sutton & I.G.Pascoe, 1989
- Hypocline H.Sydow, 1939
- Hypodermium
- Hypogloeum Petrak, 1923
- Hypospila Fr., 1825
- Hysteridium P.Karsten, 1905
- Hysteriopsis H.T.Geyleron Nordenskiöld, 1887
- Hysteropycnis Hilitzer, 1929
- Ialomitzia Gruia, 1964
- Icerymyces Brain, 1923
- Idiocercus B.C.Sutton, 1967
- Imicles Shoemaker & Hambleton, 2001
- Imimyces A.Hern.-Gut. & B.Sutton
- Impudentia V.Vujanovic, 2003
- Inesiosporium R.F.Castañeda Ruiz & W.Gams, 1997
- Infrafungus Ciferri, 1951
- Inifatiella R.F.Castañeda, 1985
- Innotospora
- Intercalarispora J.L.Crane & J.D.Schoknecht, 1983
- Intralichen D.Hawksw. & M.S.Cole
- Ionophragmium E.P.Peres, 1961
- Irpicomyces Deighton, 1969
- Isariella Henn.
- Ischnostroma H.Sydow & P.Sydow, 1914
- Isthmoconidium J.Etayo & F.Berger, 2013
- Isthmophragmospora Kuthub. & Nawawi
- Isthmotricladia Matsush.
- Ityorhoptrum P.M.Kirk
- Iyengarina C.V.Subramanian, 1958
- Jahniella Petrak, 1921
- Jainesia Gonz.Fragoso & Ciferri, 1925
- Janetia M.B.Ellis
- Javonarxia C.V.Subramanian, 1995
- Jayarambhatia J.Pratibha, 2013
- Jerainum A.Nawawi & A.J.Kuthubutheen, 1992
- Jimwhitea M.Krings & T.N.Taylor, 2012
- Jimwhiteia M.Krings & T.N.Taylor, 2012
- Jubispora B.C.Sutton & H.J.Swart, 1986
- Junctospora Minter & Hol.-Jech.
- Kalamarospora G.Delgado, 2011
- Kalchbrenneriella Diederich & M.S.Christ.
- Kaleidosporium K.T.van Warmelo & B.C.Sutton, 1981
- Kamatella K.H.Anahosur, 1969
- Kameshwaromyces Kamal, R.K.Verma & G.Morgan-Jones, 1986
- Karsteniomyces D.Hawksw.
- Katherinomyces
- Keissleriomyces D.L.Hawksworth, 1981
- Kendrickomyces B.C.Sutton, V.G.Rao & Mhaskar, 1976
- Kephartia R.C.Harris & J.C.Lendemer, 2013
- Kermincola K.Sulc, 1907
- Ketubakia M.N.Kamat, K.I.M.Varghese & V.G.Rao, 1987
- Kionocephala P.M.Kirk
- Kmetia Bresadola & P.A.Saccardo, 1902
- Kmetiopsis Bat. & Peres
- Knemiothyrium A.C.Batista & J.L.Bezerra, 1960
- Kodonospora K.Ando, 1993
- Kolletes Kohlmeyer & Volkmann-Kohlmeyer, 2005
- Kontospora A.Roldán, M.Honrubia & L.Marvanová, 1990
- Koorchalomella Chona, Munjal & J.N.Kapoor, 1958
- Korunomyces Hodges & F.A.Ferreira
- Kostermansinda Rifai, 1968
- Kostermansindiopsis R.F.Castañeda Ruiz, 1986
- Kramabeeja G.V.Rao & K.A.Reddy, 1981
- Kreiseliella U.Braun
- Kretschmaria E.M.Fries, 1849
- Krishnamyces Hosagoudar, 2003
- Kumanasamuha P.R.Rao & D.Rao, 1964
- Kumanasamuha arakuensis T.Raman, Ren.Rao & D.Rao
- Kumanasamuha geaster[5]
- Kumanasamuha kalakadensis Subram. & Bhat
- Kumanasamuha novozelandica L.Hunter & W.B.Kendr.
- Kumanasamuha sundara P.Rag.Rao & D.Rao
- Kumarisporites
- Kumarisporites ramanujamii (P.Kumar) Kalgutkar & Janson.
- Kundalinella D.Hande & A.Subhedar, 2001
- Kutilakesa
- Kyphophora B.C.Sutton, 1991
- Labrella Fr.
- Lacellina Sacc.
- Lacellinopsis Subram.
- Lachnodochium El.Marchal, 1895
- Laciniocladium Petri, 1917
- Lactydina C.V.Subramanian, 1978
- Lageniforma Plunkett, 1925
- Lagenomyces Cavalcante & Silva, 1972
- Lagenula
- Lambdasporium Matsush.
- Lambinonia Sérusiaux & Diederich, 2005
- Langloisula J.B.Ellis & Everhart, 1889
- Lappodochium T.Matsushima, 1975
- Lasiodiplodiella Zambettakis, 1955
- Lasiophoma Spegazzini, 1918
- Lasiothyrium H.Sydow & P.Sydow, 1913
- Lasmeniella Petr. & Syd.
- Latericonis G.V.Rao, K.A.Reddy & de Hoog, 1984
- Lateriramulosa Matsush.
- Laterispora F.A.Uecker, W.A.Ayers & P.B.Adams, 1982
- Lawalreea Dieder.
- Lawalreea Maire
- Leandria E.Rangel, 1915
- Lecaniascus Moniez, 1887
- Lecaniocola Brain, 1923
- Lecanostictopsis B.Sutton & Crous, 1997
- Lecythispora P.N.Chowdhry, 1985
- Leeina Petrak, 1923
- Leightoniomyces D.Hawksw. & B.Sutton
- Lembuncula Ciferri, 1954
- Lemkea G.Morgan-Jones & R.C.Sinclair, 1983
- Lentescospora Linder
- Lepidophyton Tribondeau, 1899
- Lepisticola W.Gams, 2009
- Leprieurina G.Arnaud, 1918
- Leprieurinella Bat. & H.Maia
- Leptochlamys Died.
- Leptodermella Höhn.
- Leptodermopsis Spegazzini ex F.von Höhnel, 1923
- Leptomelanconium Petr.
- Leptophyllosticta I.E.Brezhnev, 1939
- Leptosphaerella Spegazzini, 1909
- Leptosporina Chardón, 1939
- Leptostromella (Sacc.) Sacc.
- Leptothyrella Sacc.
- Leptothyrina Höhn.
- Leptotrichum Corda, 1842
- Leucoconiella Batista, H.Maia & Peres, 1960
- Leucoconis Theissen & H.Sydow, 1918
- Leucodochium H.Sydow & P.Sydow, 1917
- Leucopenicillifer G.R.W.Arnold, 1971
- Leucosporium Corda, 1833
- Leuliisinea Matsushima, 1985
- Leutheromyces
- Levieuxia E.M.Fries, 1848
- Lichenobactridium Diederich & Etayo, 1995
- Lichenodiplisiella S.Kondratyuk & I.Kudratov, 2002
- Lichenohendersonia Calatayud & Etayo, 2001
- Lichenopeziza H.Zukal, 1884
- Lichenophoma Keissl., 1911
- Lichenopuccinia D.Hawksw. & Hafellner
- Lichenostella V.Calatayud & J.Etayo, 1999
- Linochorella H.Sydow & P.Sydow, 1912
- Linodochium Höhn.
- Linosporoidea R.Keller, 1895
- Lisella
- Listeromyces Penzig & P.A.Saccardo, 1901
- Lithosporocarpia R.Kar, B.D.Mandaokar & R.K.Kar, 2009
- Lobatopedis P.M.Kirk
- Lobomyces Borelli, 1968
- Lolia Abdel-Aziz & Abdel-Wahab, 2011
- Loliomyces Maire, 1937
- Lomaantha Subram., 1954
- Lomachashaka C.V.Subramanian, 1956
- Lonchospermella Speg.
- Lophodermopsis Spegazzini, 1910
- Loten M.Adanson, 1763
- Ludwigomyces Kirschst.
- Luzfridiella R.F.Castañeda & W.B.Kendr.
- Lylea Morgan-Jones, 1975
- Lysotheca R.Ciferri, 1962
- Mackenziella Yanna & K.D.Hyde, 2009
- Macrodendrophoma T.Johnson, 1904
- Macrodiplodia Sacc.
- Macroseptoria
- Macrostilbum Patouillard, 1898
- Macrotrichum Grev.
- Magdalaenaea G.Arnaud
- Magmopsis
- Mahabalella B.C.Sutton & S.D.Patil, 1966
- Malleomyces Hallier, 1870
- Mammariopsis L.J.Hutchison & J.Reid, 1988
- Manginella Bat. & H.Maia
- Manginula G.Arnaud, 1918
- Manoharachariomyces N.K.Rao, D.K.Agarwal & Kunwar, 2005
- Mapletonia B.C.Sutton, 1991
- Margarinomyces Laxa
- Marssoniella
- Martinellisia V.G.Rao & K.I.M.Varghese, 1977
- Massalongina Bubák
- Massariothea Syd.
- Mastigomyces A.Imshenetski & A.Kriss, 1933
- Mathurisporites
- Matruchotia Boulanger
- Matsushimiella R.F.Castañeda & Heredia
- Matsushimomyces V.G.Rao & Varghese, 1979
- Maullinia
- Maurya Patouillard, 1898
- Medusamyces G.L.Barron & E.Szijarto, 1990
- Medusula Tode
- Megalodochium F.C.Deighton, 1960
- Megaster Cif. et al.
- Melanocephala S.Hughes
- Melanographium Sacc., 1913
- Melanomyces H.Sydow & P.Sydow, 1917
- Melanophoma Papendorf & J.W.du
- Toit, 1967 Melanosella Örösi-Pál, 1936
- Melanosphaeria
- Melophia Sacc.
- Memnonillasporonites
- Menidochium R.F.Castañeda Ruiz & W.B.Kendrick, 1990
- Menoidea L.Mangin & Hariot, 1907
- Mercadomyces J.Mena, 1988
- Mesocorynespora
- Metadiplodia Syd.
- Metasphaerella Spegazzini, 1924
- Metazythia Petrak, 1950
- Metazythiopsis M.Morelet, 1988
- Micareopsis R.C.Harris & J.C.Lendemer, 2013
- Microblastosporon Ciferri, 1930
- Microclava F.Stevens
- Microdiscula Höhn.
- Microdothiorella C.A.A.Costa & Sousa da Câmara, 1955
- Microhendersonula Dias & Sousa da Câmara, 1952
- Microperella Höhn.
- Microsphaeropsis Sousa da Câmara, Oliveira & Luz, 1936
- Microtrichosphaera R.C.Pereira-Carvalho, G.Sepúlveda-Chavera & J.C.Dianese, 2009
- Microtyle Speg.
- Microxyphiella Speg.
- Microxyphiopsis A.C.Batista, 1963
- Mindoa Petr.
- Minutoexcipula V.Atienza & D.Hawksw.
- Miricatena Punith. & Spooner
- Mirimyces T.R.Nag Raj, 1993
- Mitrorhizopeltis Bat. & Cavalc.
- Mixtoconidium Etayo
- Molgosphaera Dumortier, 1822
- Monochaetiella E.Castellani, 1943
- Monochaetopsis Patouillard, 1918
- Monodia Breton & Faurel, 1970
- Monodictysporites
- Monodidymaria U.Braun, 1994
- Monodisma Alcorn, 1975
- Monodorus Bat. & J.L.Bezerra
- Monopodium
- Monosporiella Spegazzini, 1918
- Monosporium Bonord., 1851
- Monotospora Corda, 1837
- Monotoyella Castellani & Chalmers, 1913
- Monotretomyces
- Monotrichum Gäumann, 1922
- Monotropomyces Costantin & Dufour, 1921
- Montoyella Castellani & Chalmers, 1907
- Moorella P.Rag.Rao & D.Rao
- Moralesia Urries, 1956
- Morganjonesia
- Morioliopsis
- Morrisographium M.Morelet, 1968
- Mossopisporites
- Mouliniea C.P.Robin, 1853
- Mucobasispora Mustafa & Abdul-Wahid, 1990
- Mucosetospora M.Morelet, 1972
- Muiaria Thaxter, 1914
- Muiogone Thaxter, 1914
- Muirella R.Sprague, 1959
- Multicellites
- Multicladium K.B.Deshpande & K.S.Deshpande, 1966
- Multipatina Sawada, 1928
- Multisporascus S.Marincowitz, M.J.Wingfield & P.W.Crous, 2008
- Muricularia P.A.Saccardo, 1877
- Mycardothelium Vainio, 1928
- Mycelephas R.F.Castañeda
- Myceloderma Ducomet, 1907
- Mycobacillaria H.A.Naumov, 1915
- Mycocarpon S.A.Hutch., 1955
- Mycocentrodochium K.Matsushima & T.Matsushima, 1996
- Mycoenterolobium Goos, 1970
- Mycogemma K.M.Zalessky, 1915
- Mycomater E.M.Fries, 1825
- Mycomyces F.Wyss-Chodat, 1927
- Mycopara A.C.Batista & J.L.Bezerra, 1960
- Mycospraguea U.Braun & C.T.Rogerson, 1993
- Mycosticta F.von Höhnel, 1918
- Mycosylva M.C.Tulloch
- Mycousteria M.L.Farr
- Myiocoprula Petrak, 1955
- Myriellina Höhn.
- Myriocephalum De Not. ex Corda
- Myrmecomyces D.P.Jouvenaz & J.W.Kimbrough, 1991
- Myropyxis Cesati ex Rabenhorst, 1851
- Myrotheciastrum S.Q.Abbas & B.C.Sutton, 1988
- Myrotheciopsis
- Mysia Schlechtendal
- Mystrosporiella R.L.Munjal & D.D.Kulshrestha, 1969
- Mystrosporium Corda
- Myxofusicoccum
- Myxoparaphysella Caballero, 1941
- Myxosporella Sacc., 1881
- Myxosporidiella A.Negru, 1960
- Myxostomellina H.Sydow, 1931
- Myxothyrium Bubák & Kabát
- Naemosphaera P.A.Karsten, 1888
- Naemosphaerella F.von Höhnel, 1923
- Naemospora Roth ex Kuntze
- Nagrajia R.F.Castañeda Ruiz & W.B.Kendrick, 1991
- Nagrajomyces V.A.Mel'nick, 1984
- Nakatopsis S.R.Whitton, E.H.C.McKenzie & K.D.Hyde, 2001
- Nanoschema B.C.Sutton, 1980
- Naothyrsium A.C.Batista, 1960
- Naranus T.Watanabe, 1995
- Nascimentoa
- Natarajania Pratibha & Bhat, 2006
- Navaneethospora V.G.Rao, 1994
- Necraphidium Ciferri, 1951
- Negeriella Hennings, 1897
- Nematogonium
- Nematogonum Desm.
- Nematographium Goid.
- Nemozythiella F.von Höhnel, 1925
- Neoalpakesa Punith.
- Neoarbuscula B.C.Sutton, 1983
- Neobarclaya P.A.Saccardo, 1899
- Neochaetospora B.C.Sutton & K.V.Sankaran, 1991
- Neodiplodina Petrak, 1954
- Neofuckelia Zeller & Goodding, 1935
- Neojohnstonia B.Sutton
- Neoligniella N.A.Naumov, 1951
- Neomelanconium Petr.
- Neoovularia U.Braun, 1992
- Neopeltis H.Sydow, 1937
- Neopericonia Kamal, A.N.Rai & G.Morgan-Jones, 1983
- Neophoma Petr. & Syd.
- Neospegazzinia Petrak & H.Sydow, 1936
- Neosporidesmina
- Neosporidesmium Á.Mercado Sierra & J.Mena Portales, 1988
- Neothyridiaria Petrak, 1934
- Neottiospora Desm.
- Neottiosporella F.von Höhnel ex Falck, 1923
- Nexomyces
- Nidulispora A.Nawawi & A.J.Kuthubutheen, 1990
- Nigrodiplodia Kravtzev, 1955
- Nigromacula Etayo
- Nigropuncta D.Hawksw.
- Nigrosporites
- Nitschkea
- Nosophloea E.M.Fries, 1849
- Nothopodospora Mirza, 1963
- Nothospora Peyronel, 1913
- 环葚孢属 Novozymia W.P.Wu, 2005
- Nowellia F.L.Stevens, 1924
- Nummospora E.Müller & Shoemaker, 1964
- Nummularoidea (M.C.Cooke & Massee) C.G.Lloyd, 1924
- Nusia C.V.Subramanian, 1995
- Nyctalina
- Nyctalospora E.F.Morris, 1972
- Nypaella K.D.Hyde & B.Sutton, 1992
- Obeliospora Nawawi & Kuthub.
- Obstipipilus B.C.Sutton, 1968
- Obstipispora R.C.Sinclair & G.Morgan-Jones, 1979
- Ochrosphaera Sawada, 1959
- Octopodotus Kohlm. & Volkm.-Kohlm., 2003
- Octopodotus stupendus Kohlm. & Volkm.-Kohlm.[6]
- Odontodictyospora A.Mercado, 1984
- Oedothea H.Sydow, 1930
- Ojibwaya B.C.Sutton, 1973
- Omega B.C.Sutton & D.W.Minter, 1988
- Ommatospora Bat. & Cavalc.
- Ommatosporella A.C.Batista, J.Bezerra & D.J.M.Poroca, 1967
- Onakawananus N.W.Radforth, 1958
- Oncopodiella G.Arnaud ex Rifai, 1965
- Oncopodium Sacc.
- Oncospora Kalchbr.
- Oncosporella P.A.Karsten, 1887
- Oncosporomyces Bat.
- Oncostroma Batista & Marasas, 1966
- Onychophora W.Gams, P.J.Fisher & J.Webster
- Oothyrium H.Sydow, 1939
- Opegraphites Debey & Ettingshausen, 1859
- Opethyrium Spegazzini, 1919
- Ophiodendron Arnaud, 1952
- Ophiopodium
- Ophiosira Petrak, 1955
- Ophiotrichum Kunze ex E.M.Fries, 1849
- Orbimyces Linder, 1944
- Ordus K.Ando & Tubaki, 1983
- Ormathodium H.Sydow, 1928
- Orphanocoela T.R.Nag Raj, 1989
- Ostracodermidium K.G.Mukerji, 1973
- Otomyces E.H.Hallier, 1869
- Ovadendron Sigler & J.W.Carmich., 1976
- Overeemella
- Ovulariella Bubák & Kabát, 1912
- Ovularites A.C.Whitford, 1916
- Paathramaya C.V.Subramanian, 1956
- Pachycladina L.Marvanová, 1987
- Pactilia Fr., 1836
- Palaeoanellus A.R.Schmidt, H.Dörfelt & V.Perrichot, 2008
- Palaeoleptosphaeria Barlinge & Paradkar, 1982
- Palaeomycus
- Palaeosclerotium G.W.Rothwell, 1972
- Palawaniopsis A.C.Batista, R.Ciferri & Nascimento, 1959
- Paleosaccardia M.Locquin & C.Prive-Gill, 1984
- Paleoserenomyces Currah, Stockey & B.A.LePage, 1998
- Panchanania C.V.Subramanian & N.G.Nair, 1966
- Papilionospora V.Rao & B.C.Sutton, 1976?
- Pappimyces B.C.Sutton & C.S.Hodges, 1975
- Paraaoria R.K.Verma & Kamal, 1987
- Paraarthrocladium T.Matsushima, 1993
- Parabeltrania A.Rambelli, 2008
- Parabilimbia
- Parablastocatena Y.D.Zhang & X.G.Zhang, 2012
- Parachinomyces M.M.Thaung, 1979
- Parachionomyces Thaung, 1979
- Paracytospora Petrak, 1925
- Paradactylaria C.V.Subramanian & K.Sudha, 1989
- Paradactylella T.Matsushima, 1993
- Paradendryphiopsis M.B.Ellis
- Paradidymobotryum C.J.K.Wang & B.C.Sutton, 1984
- Paradiplodia Spegazzini ex Clements & Shear, 1931
- Paradischloridium D.J.Bhat & B.C.Sutton, 1985
- Paradiscula Petr.
- Parafulvia Kamal, A.N.Rai & Morgan-Jones
- Paraharknessia Matsushima, 2003
- Parahelminthosporium
- Parahyalotiopsis T.R.Nag Raj, 1976
- Paramassariothea C.V.Subramanian & J.Muthumary, 1979
- Paramenisporopsis Matsushima, 2003
- Parapericonia M.B.Ellis, 1976
- Parapericoniella U.Braun, B.Heuchert & K.Schubert, 2006
- Paraphaeoisaria de Hoog & Morgan-Jones, 1978
- Paraphialocephala Budathoki, 1997
- Parapithomyces M.M.Thaung, 1976
- Parapotamomyces
- Parapyricularia M.B.Ellis, 1972
- Pararobillarda T.Matsushima, 1996
- Parasphaeropsis Petrak, 1953
- Paraspora W.B.Grove, 1884
- Parastenella J.C.David, 1991
- Parastigmatellina Bat. & C.A.A.Costa
- Paratetraploa M.K.M.Wong & K.D.Hyde, 2002
- Parathozetella F.R.Barbosa et al.
- Paratomenticola M.B.Ellis, 1976
- Paratrichoconis F.C.Deighton & K.A.Pirozynski, 1972
- Paraulocladium R.F.Castañeda Ruiz, 1986
- Parvosympodium A.W.Ramaley, 2002
- Paspalomyces D.H.Linder, 1933
- Patellina Grove ex Petch
- Patouillardia
- Patouillardiella Petch, 1922
- Patouillardiella Speg., 1889
- Patriciomyces D.L.Hawksworth, 2001
- Peckia
- Pedilospora
- Peethasthabeeja P.Raghuveer Rao, 1981
- Pellionella (P.A.Saccardo) T.Petch, 1924
- Pellionella (Sacc.) Sacc.
- Peltasterella Bat. & H.Maia
- Peltasterinostroma Punith.
- Peltasteropsis Bat. & H.Maia
- Peltistroma Henn.
- Peltistromella F.von Höhnel, 1907
- Peltosoma H.Sydow, 1925
- Peltostromellina A.C.Batista & A.F.Vital, 1959
- Peltostromopsis A.C.Batista & A.F.Vital, 1959
- Penomyces Giard ex Sacc. & Trotter, 1913
- Pentaster
- Penzigomyces Subramanian, 1992
- Perelegamyces R.F.Castañeda Ruiz & W.B.Kendrick, 1990
- Peridiomyces H.Karsten, 1843
- Periola E.M.Fries, 1822
- Perisporiacites J.Félix, 1894
- Perisporites L.Pampaloni, 1902
- Perisporium Fr.
- Perizomella H.Sydow, 1927
- Perzia Baral & B.Perić
- Pestalozziella Sacc. & Ellis ex Sacc.
- Petrakiopsis C.V.Subramanian & K.R.C.Reddy, 1968
- Peyronelina
- Phacidiopsis H.T.Geyleron Nordenskiöld, 1887
- Phacostroma Petrak, 1955
- Phacostromella F.Petrak, 1955
- Phaeoantenariella W.A.Cavalcante, 1969
- Phaeoblastophora Partridge & Morgan-Jones, 2002
- Phaeobotrys M.Calduch, J.Gené & J.Guarro, 2002
- Phaeocandelabrum R.F.Castañeda, Gusmão, Guarro & Iturr.
- Phaeocapdinula Spegazzini, 1924
- Phaeodactylella Udaiyan, 1992
- Phaeodiscula G.Cuboni, 1891
- Phaeodochium
- Phaeodomus F.von Höhnel, 1909
- Phaeodothiopsis Theissen & H.Sydow, 1914
- Phaeohendersonia F.von Höhnel, 1918
- Phaeohiratsukaea Udagawa & Iwatsu, 1990
- Phaeohymenula Petrak, 1954
- Phaeoidiomyces D.Dornelo-Silva & J.C.Dianese, 2004
- Phaeolabrella Spegazzini, 1912
- Phaeomarssonia Spegazzini, 1908
- Phaeomonilia R.F.Castañeda, Heredia & R.M.Arias, 2007
- Phaeomonostichella Keissler ex Petrak, 1941
- Phaeophloeosporella P.W.Crous & B.C.Sutton, 1997
- Phaeophomopsis F.von Höhnel, 1925
- Phaeopolynema Speg.
- Phaeoschizotrichum C.R.Silva, Gusmão & R.F.Castañeda
- Phaeosphaera A.C.Batista & R.Ciferri, 1963
- Phaeostilbelloides Armando, Z.M.Chaves & Dianese
- Phaeothyrium Petrak, 1947
- Phaeotrichoconis C.V.Subramanian, 1956
- Phaeoxyphium Bat. & Cif.
- Phellostroma H.Sydow & P.Sydow, 1914
- Phialetea
- Phialisphaera Dumortier, 1822
- Phialoarthrobotryum Matsush., 1975
- Phialogangliospora Udaiyan & V.S.Hosagoudar, 1992
- Phialophaeoisaria T.Matsushima, 1995
- Phialophoronites D.Mukherjee, 2012
- Phialophorophoma Linder, 1944
- Phialoselanospora Udaiyan, 1992
- Phialostele F.C.Deighton, 1969
- Phloeoconis E.M.Fries, 1849
- Phloeosporina F.von Höhnel, 1924
- Phlyctaena
- Phlyctaeniella Petrak, 1922
- Phomachora Petr. & Syd.
- Phomachorella Petrak, 1947
- Phomyces Clem.
- Phragmoconidium G.F.Sepúlveda, R.C.Pereira-Carvalho & J.C.Dianese, 2009
- Phragmodochium F.von Höhnel, 1924
- Phragmogloeum Petrak, 1954
- Phragmopeltis Hennings, 1904
- Phragmospathula Subram. & N.G.Nair, 1966
- Phragmospathulella J.Mena Portales & Á.Mercado Sierra, 1987
- Phragmostilbe
- Phthora d'Hérelle, 1909
- Phylloedia
- Phylloedium E.M.Fries, 1825
- Phyllohendersonia Tassi, 1902
- Phylloporina C.W.Dodge, 1948
- Physalidiella Rulamort
- Physalidiopsis R.F.Castañeda Ruiz & W.B.Kendrick, 1990
- Physalosporella Spegazzini, 1910
- Physciospora
- Pilulina Arnaud, 1954
- Pinatubo J.B.Manandhar T.W.Mew, 1996
- Piperivora Siboe, P.M.Kirk & P.F.Cannon, 1999
- Piptostomum Léveillé, 1845
- Piricauda Bubák, 1914
- Piricaudilium V.Holubová-Jechová, 1988
- 扇孢属 Piricaudiopsis J.Mena Portales & A.Mercado Sierra, 1987
- Piricularia
- Pirispora L.Faurel & G.Schotter, 1966
- Pirostoma (E.M.Fries) Saccardo, 1896
- Pirostoma (Fr.) Fuckel
- Pirostomella P.A.Saccardo, 1914
- Pithosira Petrak, 1949
- Pittostroma T.Kowalski & T.N.Sieber, 1992
- Placella H.Sydow, 1938
- Placodiplodia Bubák, 1916
- Placonemina Petrak, 1921
- Placosphaerella Patouillard, 1897
- Placosphaerina Maire, 1917
- Placothea H.Sydow, 1931
- Placothyrium Bubák, 1916
- Plagiostigmella Petrak, 1949
- Platycarpium
- Plecotrichum Corda, 1831
- Plectonaemella F.von Höhnel, 1915
- Plectopeltis Syd.
- Plectophomopsis Petrak, 1922
- Plectopycnis Bat. & A.F.Vital
- Plectosira Petrak, 1929
- Plectronidiopsis T.R.Nag Raj, 1979
- Plectronidium T.R.Nag Raj, 1977
- Plectrothrix C.L.Shear, 1902
- Plenocatenulis Bat. & Cif.
- Plenophysa H.Sydow & P.Sydow, 1920
- Plenotrichaius Bat. & Valle
- Plenotrichella Bat. & A.F.Vital
- Plenotrichopsis A.C.Batista, 1961
- Plenotrichum H.Sydow, 1927
- Plenozythia H.Sydow, 1916
- Pleococcum Desmazières & Montagne, 1849
- Pleocouturea G.Arnaud, 1911
- Plesiospora C.Drechsler, 1971
- Pleurodiscula F.von Höhnel, 1926
- Pleurodiscus Petrak, 1931
- Pleurodomus Petrak, 1934
- Pleuropedium Marvanová & S.H.Iqbal
- Pleuroplaconema Petr.
- Pleuroplacosphaeria H.Sydow, 1928
- Pleuropyxis Corda, 1837
- Pleurotheciopsis B.Sutton
- Pleurothyriella Petrak & H.Sydow, 1925
- Pleurothyrium Bubák, 1916
- Pleurovularia R.Kirschner & U.Braun, 2002
- Pocillopycnis B.J.Dyko & B.C.Sutton, 1979
- Podocapsa Van Tieghem, 1887
- Podosporiella J.B.Ellis & Everhart, 1894
- Podosporiopsis
- Podosporium Schwein.
- Podoxyphiomyces A.Batista, R.C.Valle & G.E.P.Peres, 1961
- Poikilosperma Bat. & J.L.Bezerra
- Polybulbophiale T.-K.Goh & K.D.Hyde, 1998
- Polycladium Ingold
- Polydesmus Mont.
- Polyetron Bat. & Peres
- Polyhyphaethyrites R.Srivastava & R.K.Kar, 2004
- Polylobatispora Matsush.
- Polyrostrata T.P.Devi & N.Mathur, 2009
- Polyscytalina Arnaud, 1954
- Polystomellomyces A.C.Batista, 1959
- Polystratorictus T.Matsushima, 1993
- Polysynnema O.Constantinescu & K.A.Seifert, 1988
- Polythrinciella Bat. & H.Maia
- Polythrinciopsis J.Walker, 1966
- Polytretophora A.Mercado, 1983
- Porocladium Descals
- Poroisariopsis M.Morelet, 1971
- Poropeltis Hennings, 1904
- Porophilomyces U.Braun, 2000
- Porosphaera Dumortier, 1822
- Porosubramaniania Holubová-Jechová, 1985
- Porrectotheca T.Matsushima, 1996
- Powellia A.C.Batista & G.E.P.Peres, 1964
- Prismaria Preuss
- Proboscispora E.Punithalingam, 1984
- Proliferosphaera T.P.Devi, 2012
- Prophytroma Sorokin, 1877
- Prosthemiella P.A.Saccardo, 1881
- Protostegiomyces Batista & Vital, 1955
- Protostroma Batista, 1957
- Psammina Sacc. & M.Rousseau
- Pseudoanguillospora S.H.Iqbal
- Pseudoaristastoma S.Singh, 1979
- Pseudoasperisporium U.Braun, 2000
- Pseudobasidiospora Dyko & B.Sutton, 1978
- Pseudocanalisporium R.F.Castañeda Ruiz & W.B.Kendrick, 1991
- Pseudocenandium
- Pseudocenangium P.Karst.
- Pseudochuppia Kamal, A.N.Rai & G.Morgan-Jones, 1984
- Pseudoconium F.Petrak, 1969
- Pseudocytoplacosphaeria Punith. & Spooner
- Pseudocytospora Petrak, 1923
- Pseudodeightoniella
- Pseudodichomera F.von Höhnel, 1918
- Pseudodictya L.R.Tehon & G.L.Stout, 1929
- Pseudodidymaria U.Braun
- Pseudodiplodia (P.Karst.) Sacc.
- Pseudodiscula R.Laubert, 1911
- Pseudoeurotium
- Pseudofumago Briosi & Farneti, 1906
- Pseudofuscophialis A.Sivanesan & H.S.Chang, 1995
- Pseudogaster F.von Höhnel, 1907
- Pseudographiella E.F.Morris
- Pseudographium von Höhnel, 1915
- Pseudohansfordia G.R.W.Arnold, 1970
- Pseudohendersonia P.W.Crous & M.E.Palm, 1999
- Pseudolasmeniella Petrak & Sydow, 1927
- Pseudomelanconium
- Pseudoneottiospora Faurel & Schotter, 1965
- Pseudopapulaspora N.D.Sharma, 1977
- Pseudopatellina Höhn.
- Pseudopeltistroma K.Katumoto, 1975
- Pseudoperitheca Elenkin, 1922
- Pseudopetrakia M.B.Ellis
- Pseudopezizites M.Fiore, 1932
- Pseudophloeosporella U.Braun, 1993
- Pseudophragmotrichum W.P.Wu, B.C.Sutton & A.C.Gange, 1998
- Pseudophyllachora Spegazzini, 1919
- Pseudopolystigmina Murashkinski, 1928
- Pseudoramularia T.Matsushima, 1983
- Pseudorhizopogon Y.Kobayasi, 1983
- Pseudosaccharomyces Briosi & Farneti, 1906
- Pseudoschizothyra E.Punithalingam, 1980
- Pseudosphaerialites B.S.Venkatachala & R.K.Kar, 1969
- Pseudostegia Bubák, 1906
- Pseudostictis
- Pseudostilbella Munt.-Cvetk. & Gómez-Bolea, 1995
- Pseudostracoderma A.E.Martinez & A.M.Godeas, 1997
- Pseudothyrium F.von Höhnel, 1927
- Pseudotorula Subram.
- Pseudotracylla B.Sutton & Hodges
- Pseudotrichoconis W.A.Baker & Morgan-Jones
- Pseudozythia F.von Höhnel, 1902
- Psilosphaeria Cooke
- Pterulopsis Wakefield & Hansford, 1943
- Pterygosporopsis P.M.Kirk
- Pucciniopsis Spegazzini, 1888
- Pucciniospora Spegazzini, 1886
- Pullospora L.Faurel & G.Schotter, 1965
- Pulvinaria Bonorden, 1851
- Pulvinella A.W.Ramaley, 2001
- Pulvinotrichum I.J.Gamundí, A.M.Arambarri & A.L.Giaiotti, 1981
- Punctillina R.A.Toro, 1934
- Pycnidioarxiella E.Punithalingam & N.D.Sharma, 1980
- Pycnidiopeltis Batista & C.A.A.Costa, 1959
- Pycnis Brefeld, 1881
- Pycnodactylus Batista, A.A.Silva & Cavalcante, 1967
- Pycnodallia J.Kohlmeyer & B.Volkmann-Kohlmeyer, 2001
- Pycnoharknessia T.Matsushima, 1996
- Pycnomma H.Sydow, 1924
- Pycnomoreletia Rulamort, 1990
- Pycnopleiospora C.Z.Wei, Y.Harada & K.Katumoto, 1997
- Pycnopsammina Diederich & Etayo
- Pycnorostrum Golovin, 1950
- Pycnoseynesia Kuntze
- Pycnosporium Siegel, 1909
- Pycnothera N.D.Sharma & G.P.Agarwal
- Pycnothyriella A.C.Batista, 1952
- Pycnothyrium Died., 1913
- Pyramidospora Sv.Nilsson
- Pyrenochaetella P.Karsten ex von Höhnel, 1917
- Pyrenyllium Clements, 1909
- Pyrgostroma Petrak, 1951
- Pyriculariopsis M.B.Ellis
- Pyripnomyces Cavalcante, 1972
- 四孢霉属 Quadracaea Lunghini, Pinzari & Zucconi
- Quadricladium A.Nawawi & A.J.Kuthubutheen, 1989
- Quasidiscus
- Queenslandia Bat. & H.Maia
- Quezelia L.Faurel & G.Schotter, 1965
- Quintara
- Radaisiella
- Radiatispora T.Matsushima, 1995
- Radiciseta K.Sawada & S.Katsuki, 1959
- Raizadenia S.L.Srivastava, 1981
- Ramakrishnanella Kamat & Ullasa ex Ullasa, 1970
- Ramaraomyces N.K.Rao, C.Manoharachary & R.D.Goos, 1989
- Ramasricellites
- Ramicapitulum S.R.Whitton, K.D.Hyde & E.H.C.McKenzie, 2012
- Ramicephala Voglmayr & Delgado-Rodríguez, 2003
- Ramichloridiopsis
- Ramiphialis F.R.Barbosa, Fiuza & R.F.Castañeda
- Ramoacrodictys G.Z.Zhao, 2010
- Ramoconidiifera B.C.Sutton, C.C.Carmarán & A.I.Romero, 1996
- Ramulaspera Lindr.
- Ranojevicia Bubák, 1910
- Ratnagiriathyrites R.K.Saxena & N.K.Misra, 1990
- Redbia Deighton & Piroz.
- Rehmiomyces Henn.
- Repetoblastiella R.F.Castañeda Ruiz, D.W.Minter & M.Stadler, 2010
- Rhabdoclema H.Sydow, 1939
- Rhabdogloeopsis Petrak, 1925
- Rhabdomyces Balbiani, 1889
- Rhabdostromella F.von Höhnel, 1915
- Rhacodium Persoon ex Wallroth, 1833
- Rhexoampullifera P.M.Kirk
- Rhexoprolifer T.Matsushima, 1996
- Rhinocladium Sacc. & Marchal
- Rhinotrichella G.Arnaud ex de Hoog
- Rhinotrichum Corda
- Rhipidocephalum Trail
- Rhizogaster P.F.Reinsch, 1875
- Rhizohypha R.Chodat & Sigriansky, 1911
- Rhizosphaerina B.C.Sutton, 1986
- Rhizostroma E.M.Fries, 1819
- Rhodesiopsis B.Sutton & R.Campb.
- Rhodothallus A.C.Batista & Ciferri, 1959
- Rhombostilbella Zimm.
- Rhynchnostrigula Batista, J.L.Bezerra & Cavalcante
- Rhynchodiplodia Briosi & Farneti, 1906
- Rhynchomyces Willk.
- Rhynchoseptoria Unamuno, 1940
- Rhynchosporina J.A.von Arx, 1957
- Rhyncomeliola Spegazzini, 1884
- Riclaretia Peyronel, 1915
- Rileya A.Funk, 1979
- Riomyces A.Ferrer, A.N.Miller, C.Sarmiento & C.A.Shearer, 2012
- Robakia Petrak, 1952
- Rogergoosiella A.Hernández-Gutiérrez & J.Mena Portales, 1996
- Roigiella R.F.Castañeda, 1984
- Roscoepoundia Kuntze
- Rosulomyces S.Marchand & D.Cabral, 1976
- Rota Bat., Cif. & Nascim.
- Rotaea Cesati ex Schlechtendal, 1851
- Rozella
- Ruggieria Ciferri & Montemartini, 1958
- Saania
- Sabouraudites
- Saccisporonites
- Sacidium
- Sadasivanella
- Sadasivania Subram.
- Sagrahamala Subram.
- Saliastrum Kujala, 1946
- Samarosporella Linder, 1944
- Samukuta
- Sanjuanomyces R.F.Castañeda Ruiz & W.B.Kendrick, 1991
- Santapauinda C.V.Subramanian, 1994
- Saprophragma K.B.Deshpande & K.S.Deshpande, 1966
- Saprotaphrina Verona & Rambelli, 1962
- Sarbhoyomyces U.N.Saikia, 1981
- Sarcinodochium F.von Höhnel, 1905
- Sarcinosporon D.S.King & S.C.Jong
- Sarcocypha
- Sarcopodium Ehrenberg ex A.T.Brongniart, 1824
- 蒜孢属 Sativumoides S.C.Ren, J.Ma & X.G.Zhang, 2010
- Sativumoides punicae S.C.Ren, Jian Ma & X.G.Zhang
- Sawantomyces R.Dubey & N.A.Moonnambeth, 2013
- Scaphidium F.E.Clements, 1901
- Scenomyces F.L.Stevens, 1927
- Sceptrifera Deighton, 1965
- Schizoderma G.Kunze, 1825
- Schizodiplodia
- Schizothyra Bat. & C.A.A.Costa
- Schizothyrella Thüm.
- Schizothyropsis A.C.Batista & Vital, 1960
- Schizotrichum McAlpine, 1903
- Schoenbornia Bubák
- Schwarzmannia Pisareva, 1968
- Scirrhophoma Petrak, 1941
- Scleroconium H.Sydow, 1935
- Sclerodiscus N.Patouillard, 1890
- Sclerodothiorella Diedicke, 1912
- Sclerographiopsis F.C.Deighton, 1973
- Sclerographium M.J.Berkeley, 1854
- Scleromeris H.Sydow, 1926
- Scleropycnis H.Sydow & P.Sydow, 1911
- Sclerosphaeropsis Bubák, 1914
- Sclerotiella A.K.Sarbhoy & A.Sarbhoy, 1975
- Sclerozythia Petch
- Scolecobeltrania T.Iturriaga, R.F.Castañeda-Ruiz & R.Fernández, 2013
- Scolecodochium K.Matsushima & T.Matsushima, 1996
- Scolecopeltidella J.M.Mendoza, 1925
- Scolecotheca U.Søchting & B.C.Sutton, 1997
- Scolecotrichum
- Scolecozythia Curzi, 1927
- Scolicotrichum Fuckel, 1870
- Scolicotrichum Kunze
- Scoliotidium A.C.Batista & W.A.Cavalcanti, 1963
- Scopaphoma J.Dearness & H.House, 1925
- Scopula
- Scopularia Preuss
- Scopulariella Gjaerum, 1971
- Scorpiosporium S.H.Iqbal
- Scothelius A.C.Batista, J.L.Bezerra & W.A.Cavalcanti, 1965
- Scutisporus K.Ando & Tubaki
- Scutopeltis Bat. & H.Maia
- Scutopycnis Batista, 1957
- Scypharia
- Seimatosporiella B.A.Abbas, B.C.Sutton & A.Ghaffar, 1998
- Seimatosporiopsis B.C.Sutton, A.Ghaffar & S.Q.Abbas, 1972
- Selenosira Petrak, 1957
- Selenosporopsis R.F.Castañeda Ruiz & W.B.Kendrick, 1991
- Septocytella H.Sydow, 1929
- Septodochium Matsushima, 1971
- Septodothideopsis Hennings, 1904
- Septomyxella F.von Höhnel, 1923
- Septopatella Petrak, 1925
- Septorella Berkeley
- Septosporiella
- Septosporiopsis W.A.Baker & G.A.Morgan-Jones, 2009
- Septosporium Corda, 1831
- Septothyrella Höhn.
- Septotrullula Höhn.
- Seriella E.M.Fries, 1849
- Sessiliospora D.L.Hawksworth, 1979
- Setolibertella E.Punithalingam & B.M.Spooner, 1999
- Setopeltis Bat. & A.F.Vital
- Setophiale T.Matsushima, 1995
- Setosporella Mustafa & Abdul-Wahid, 1989
- Seynesiopsis Henn.
- Shawiella Hansford, 1957
- Sheariella Petrak, 1952
- Sheathnema
- Shomea Bat. & J.L.Bezerra
- Siamia V.Robert, C.Decock & R.F.Castañeda Ruiz, 2000
- Sigmatomyces P.A.Saccardo & P.Sydow, 1913
- Similitrichoconis
- Simmonsiella
- Sinotrichium J.Wang, S.Q.Xu & D.B.Strongman, 2010
- Sirexcipula Bubák
- Sirocyphis F.E.Clements, 1909
- Sirodochiella F.von Höhnel, 1925
- Sirodomus
- Sirogloea Petrak, 1923
- Siroligniella H.A.Naumov, 1926
- Siropatella F.von Höhnel, 1903
- Sirophoma Höhn.
- Siroplacodium Petrak, 1939
- Siropleura Petrak, 1934
- Siroscyphellina Petrak, 1923
- Sirosperma H.Sydow & P.Sydow, 1916
- Sirosphaera H.Sydow & P.Sydow, 1913
- Sirosporonaemella N.A.Naumov, 1951
- Sirothecium P.Karst.
- Sirothyrium H.Sydow, 1916
- Sirozythia F.von Höhnel, 1904
- Sirozythiella Höhn.
- Sitochora H.B.P.Upadhyay, 1964
- Siwalikiathyrites R.K.Saxena & H.P.Singh, 1982
- Soliomyces K.L.Pang & J.S.Jheng, 2012
- Soloacrospora W.B.Kendrick & R.F.Castaneda Ruiz, 1991
- Solosympodiella Matsushima, 1971
- Soloterminospora T.Matsushima, 1996
- Sopagraha
- Spermatoloncha Spegazzini, 1908
- Spermochaetella Ciferri, 1954
- Spermospora R.Sprague
- Spermosporella F.C.Deighton, 1969
- Spermotrichum O.Kuntze, 1898
- Sphaerialites B.S.Venkatachala & R.K.Kar, 1969
- Sphaeridium Fresen.
- Sphaeriostromella Bubák, 1916
- Sphaeriothyrium Bubák
- Sphaerocolla P.A.Karsten, 1892
- Sphaerocybe Magrou & Marneffe, 1946
- Sphaeroides
- Sphaeromma H.B.P.Upadhyay, 1964
- Sphaeromyces G.Arnaud, 1954
- Sphaeronema
- Sphaerophoma Petrak, 1924
- Sphaerulomyces L.Marvanová, 1977
- Spheropsis Rafinesque, 1815
- Sphondylocephalum J.A.Stalpers, 1974
- Spicaria Harting
- Spicularia Pers.
- Spilomium
- Spilomyces Petr. & Syd.
- Spinulospora Deighton
- Spiralotrichum H.S.Yates, 1918
- Spiralum J.L.Mulder, 1975
- 绒落孢属 Spiropes Cif.
- Spirospora Scherffel, 1926
- Spolverinia
- Spondylocladiella Linder
- Spondylocladiopsis M.B.Ellis
- Spondylocladium
- Sporocarpon W.C.Williamson, 1878
- Sporocystis A.P.Morgan, 1902
- Sporodiniopsis F.von Höhnel, 1903
- Sporodochiolichen A.Aptroot & H.J.M.Sipman, 2011
- Sporoglena P.A.Saccardo, 1894
- Sporophiala P.Rag.Rao, 1970
- Sporophora Luteraan, 1952
- Sporotretophora S.R.Whitton, K.D.Hyde & E.H.C.McKenzie, 2012
- Stachybotryella J.B.Ellis & Bartholomew, 1902
- Stachycoremium K.A.Seifert, 1986
- Stagonopatella Petrak, 1927
- Stagonopsis P.A.Saccardo, 1884
- Stagonosporina Tassi, 1902
- Stagonostromella F.Petrak & H.Sydow, 1927
- Staheliella Emden, 1974
- Stalagmochaetia R.Ciferri & A.C.Batista, 1963
- Stanhughesiella
- Stauriella Sivichai & E.B.G.Jones, 2004
- Stauromyca R.Kar, B.D.Mandaokar & R.K.Kar, 2009
- Stauronema (Sacc.) Syd., P.Syd. & E.J.Butler
- Stauronematopsis Abbas, B.Sutton & Ghaffar, 2002
- Staurophoma F.von Höhnel, 1907
- Stegia Fr.
- Stegilla Rchb.
- Stegolerium G.Strobel, W.M.Hess & E.J.Ford, 2001
- Stegonsporiopsis Van Warmelo & B.Sutton
- Stellifraga Alstrup & Olech, 1993
- Stellomyces G.Morgan-Jones, R.C.Sinclair & A.Eicker, 1987
- Stellopeltis Bat. & A.F.Vital
- Stellospora J.L.Alcorn & B.C.Sutton, 1984
- Stellothyriella A.C.Batista & R.Ciferri, 1959
- Stemmaria Preuss, 1851
- Stenocephalopsis Chamuris & C.J.K.Wang
- Stenocephalum G.P.Chamuris & C.J.K.Wang, 1990
- Stenospora F.C.Deighton, 1969
- Stephanosporium Dal Vesco
- Stevensomyces E.F.Morris & D.E.Finley, 1965
- Stevensonula F.Petrak, 1952
- Stichospora Petrak, 1927
- Stictopatella F.von Höhnel, 1918
- Stictosepta Petr.
- Stigmastoma
- Stigmatellina A.C.Batista & H.S.Maia, 1960
- Stigmatisphaera Dumortier, 1822
- Stigmella Lév.
- Stigmopeltis H.Sydow, 1927
- Stigmopeltopsis
- Stilbellula Boedijn, 1951
- Stilbomyces J.B.Ellis & Everhart, 1895
- Stilbophoma Petrak, 1942
- Strasseriopsis B.C.Sutton & T.Kobayashi, 1970
- Stratiphoromyces T.K.Goh & K.D.Hyde, 1998
- Strionemadiplodia Zambett.
- Striosphaeropsis G.J.M.Verkley & A.van der Aa, 1997
- Stromatoneolamya
- Stromatopogon Zahlbr., 1897
- Stromatopycnis A.F.Vital, 1956
- Stromatostysanus F.von Höhnel, 1829
- Strongylothallus A.C.Batista & R.Ciferri, 1959
- Strumellopsis F.von Höhnel, 1909
- Stygiomyces B.J.Coppins & S.Y.Kondratyuk, 1995
- Stylaspergillus B.Sutton et al.
- Subicularium M.L.Farr & R.D.Goos, 1989
- Subramania D.Rao & P.R.Rao, 1964
- Subramanianospora Narayanan, J.K.Sharma & Minter, 2003
- Subulariella F.von Höhnel, 1915
- Sutravarana
- Sutravarana C.V.Subramanian & K.V.Chandrashekara, 1977
- Suttoniella S.Ahmad, 1961
- Suttonina H.C.Evans, 1984
- Syamithabeeja C.V.Subramanian & K.Natarajan, 1976
- Sylviacollaea R.Ciferri, 1963
- Symphyosirella K.A.Seifert, 2009
- Symphysos Bat. & Cavalc.
- Sympodiocladium Descals
- Sympodioclathra Voglmayr, 1997
- Sympodiophora G.R.W.Arnold
- Sympodioplanus R.C.Sinclair & S.Boshoff, 1997
- Sympodiosynnema
- Synchronoblastia F.A.Uecker & F.L.Caruso, 1988
- Syncladium Rabenhorst, 1859
- Synnemacrodictys W.A.Baker & G.A.Morgan-Jones, 2009
- Synnemaseimatoides K.Matsushima & T.Matsushima, 1996
- Synnematophora
- Synnmukerjiomyces K.R.Aneja & R.Kumar, 1999
- Synostomina Petrak, 1949
- Synsphaeria H.F.Bonorden, 1851
- Syphosphaera Dumortier, 1822
- Systremmopsis Petrak, 1923
- Taeniolina M.B.Ellis
- Taeniophora P.Karst.
- Talekpea Lunghini & Rambelli, 1979
- Talpapellis Alstrup & M.S.Cole
- Tandonea M.D.Mehrotra, 1991
- Tarsodisporus Bat. & A.A.Silva
- Tassia H.Sydow & P.Sydow, 1919
- Tawdiella K.B.Deshpande & K.S.Deshpande, 1966
- Taxomyces G.Strobel, A.Stierle, D.Stierle & W.M.Hess, 1993
- Tectacervulus A.W.Ramaley, 1992
- Tegoa Batista & Fonseca, 1961
- Telioclipeum A.P.Viégas, 1962
- Telligia Hendrickx, 1948
- Temerariomyces B.C.Sutton, 1993
- Teratosperma H.Sydow & P.Sydow, 1909
- Teratospermopsis
- Tetrabrachium A.Nawawi & A.J.Kuthubutheen, 1987
- Tetrabrunneospora B.J.Dyko, 1978
- Tetracoccosporis F.E.Clements, 1909
- Tetracona K.B.Korde, 1986
- Tetradigita R.Kar, B.D.Mandaokar & R.K.Kar, 2009
- Tetranacriella Kohlmeyer & Volkmann-Kohlmeyer, 2001
- Tetranacrium H.J.Huds. & B.Sutton
- Tetraposporium S.Hughes
- Textotheca T.Matsushima, 1996
- Thallisphaera Dumortier, 1822
- Thallospora L.S.Olive, 1948
- Thaptospora B.C.Sutton & I.G.Pascoe, 1987
- Tharoopama C.V.Subramanian, 1956
- Thelenidiomyces
- Thirumalacharia Y.Rathaiah, 1981
- Tholomyces Matsushima, 2003
- Thoracella Oudemans, 1900
- Thrinacospora Petrak, 1948
- Thyriostromella A.C.Batista & Costa, 1959
- Thyrococcum (P.A.Saccardo) P.A.Saccardo, 1913
- Thyrostromella Höhn.
- Thyrotheca Kirschstein, 1944
- Thyrsidiella von Höhnel ex von Höhnel, 1909
- Thyrsidina F.von Höhnel, 1905
- Thyrsidium Mont.
- Tiarosporellivora E.Punithalingam, 1981
- Ticogloea G.Weber, F.Spaaij & W.Gams, 1994
- Ticosynnema R.F.Castañeda-Ruiz, M.M.Granados & M.Mardones, 2013
- Tilakiopsis V.G.Rao, 1994
- Titaeopsis B.C.Sutton & F.C.Deighton, 1984
- Titaeospora Bubák
- Tomenticola F.C.Deighton, 1969
- Tompetchia C.V.Subramanian, 1985
- Torulella V.Köfaragó-Gyelnik, 1939
- Torulopsiella H.B.Bender, 1932
- Toxosporiella B.C.Sutton, 1986
- Toxosporiopsis B.C.Sutton & Sellar, 1966
- Toxosporium Vuillemin, 1896
- Trachythyriolum Spegazzini, 1919
- Traquairia Carruthers, 1873
- Treleasiella Spegazzini, 1896
- Tremellidium Petrak, 1927
- Tretocephala C.V.Subramanian, 1995
- Tretoheliocephala
- Tretolylea T.Cantillo
- Tretovularia Deighton
- Triacutus G.L.Barron & S.S.Tzean, 1981
- Tribolospora D.A.Reid
- Tricellula Beverw.
- Trichaegum Corda
- Trichobolbus Bat.
- Trichoconis Clem.
- Trichocrea Marchal
- Trichodiscula Vouaux, 1910
- Trichodochium Syd.
- Trichodytes Klebahn, 1898
- Trichomatoclava G.F.Sepúlveda, R.C.Pereira-Carvalho & J.C.Dianese, 2009
- Trichomatomyces D.Dornelo-Silva & J.C.Dianese, 2004
- Trichomatosphaera R.C.Pereira-Carvalho, G.Sepúlveda-Chavera & J.C.Dianese, 2009
- Trichopeltulum Speg.
- Trichoseptoria Cavara, 1892
- Trichosperma
- Trichosphaera Dumortier, 1822
- Trichosporodochium D.Dornelo-Silva & J.C.Dianese, 2004
- Trichostroma Corda, 1829
- Tricladiella K.Ando & Tubaki, 1984
- Tricladiopsis Descals
- Tricladiospora A.Nawawi & A.J.Kuthubutheen, 1988
- Tricornispora
- Trifurcospora K.Ando & K.Tubaki, 1988
- Triglyphium Fresenius, 1852
- Trigonosporium Tassi, 1900
- Trihyphites
- Tripithonites
- Tripoconidium C.V.Subramanian, 1978
- Triposporina Höhn.
- Triramulispora Matsush.
- Triscelophorus Ingold
- Triscelosporium A.Nawawi & A.J.Kuthubutheen, 1987
- Trisulcosporium H.J.Huds. & B.Sutton
- Tromerahelium
- Tromeropsis Sherwood
- Troposporium H.W.Harkness, 1884
- Troposporopsis S.R.Whitton, E.H.C.McKenzie & K.D.Hyde, 1999
- Tryssglobulus B.Sutton & Pascoe, 1987
- Tuberculariopsis F.von Höhnel, 1909
- Tuberculina
- Tuberculispora F.C.Deighton & K.A.Pirozynski, 1972
- Tuberosurculus Paulet, 1791
- Tunicago B.C.Sutton & F.G.Pollack, 1977
- Turturconchata J.L.Chen, T.L.Huang & S.S.Tzean, 1999
- Tylomyces Cortini, 1921
- Tympanosporium W.Gams, 1974
- Uberispora Piroz. & Hodges
- Ubrizsya Negru, 1965
- Ulocoryphus J.Michaelides, L.Hunter & W.B.Kendrick, 1982
- Uloploca H.Klebahn, 1933
- Ulvella (Nyl.) Trevis., 1880
- Umbellidion B.Sutton & Hodges
- Umispora M.A.Abdel-Wahab & T.Nagahama, 2010
- Uredinaria Chevallier, 1826
- Urohendersonia Spegazzini, 1902
- Urohendersoniella Petrak, 1955
- Urosporium Fingerhuth, 1836
- Ussurithyrites V.A.Krassilov, 1967
- Uvarispora Goos & Pirozynski, 1975
- Vagnia D.L.Hawksworth & J.Miadlikowska, 1997
- Valsarina
- Valsarioxylon von Höhnel, 1929
- Vanakripa Bhat et al.
- Vanakripa chiangmaiensis X.G.Tian & Karun.
- Vanakripa chinensis K.Zhang, W.H.Guo, R.F.Castañeda & D.W.Li
- Vanakripa ellipsoidea[7]
- Vanakripa fasciata R.F.Castañeda, M.Stadler & Decock
- Vanakripa gigaspora Bhat, W.B.Kendr. & Nag Raj
- Vanakripa inexpectata S.M.Leão & Gusmão
- Vanakripa inflata (Hol.-Jech.) Melnik
- Vanakripa menglensis D.M.Hu, L.Cai & K.D.Hyde
- Vanakripa minutiellipsoidea Pinnoi
- Vanakripa parva Bhat, W.B.Kendr. & Nag Raj
- Vanakripa rhizophorae R.M.Arias, Heredia & R.F.Castañeda
- Vanbeverwijkia V.V.Agnihothrudu, 1961
- Vanderystiella P.Hennings, 1908
- Vanibandha Manoharachary, N.K.Rao, Kunwar & D.K.Agarwal, 2006
- Vanterpoolia A.Funk, 1982
- Varioseptispora
- Varmasporites
- Vasculomyces S.F.Ashby, 1913
- Vasudevella Chona, Munjal & Bajaj, 1957
- Velloziomyces Armando, Z.M.Chaves & Dianese
- Velutipila D.L.Hawksworth, 1987
- Ventrographium H.P.Upadhyay, W.A.Cavalcanti & A.A.Silva, 1986
- Venustisporium R.F.Castañeda Ruiz & T.Iturriaga, 1999
- Venustocephala T.Matsushima, 1995
- Venustosynnema R.F.Castañeda & W.B.Kendrick
- Veracruzomyces Mercado, Guarro, Heredia & J.Mena, 2002
- Veramycella G.Delgado, 2009
- Veramyces T.Matsushima, 1993
- Verdipulvinus A.W.Ramaley, 1999
- Vermiculariopsis C.Torrend, 1912
- Veronaella C.V.Subramanian & K.R.Chandra-Reddy, 1975
- Veronidia A.Negru, 1964
- Verrucariella S.Ahmad, 1967
- Verrucarites H.R.Göppert, 1844
- Verrucaster Tobler
- Verrucophragmia P.W.Crous, M.J.Wingfield & W.B.Kendrick, 1994
- Verrudisporonites
- Verticicladus T.Matsushima, 1993
- Verticilliopsis Costantin, 1892
- Vesicularia I.Schmidt, 1974
- Vesiculohyphomyces E.A.S.Armando, R.C.Pereira-Carvalho & J.C.Dianese, 2009
- Virgariella S.Hughes
- Virgatospora Finley
- Viridiannula Etayo, 2002
- Viscomacula R.Sprague, 1950
- Vittalia Gawas & Bhat, 2007
- Vizellopsidites
- Voglinoana O.Kuntze, 1891
- Volutellaria Sacc.
- Volutellis F.E.Clements & Shear, 1931
- Volutellopsis Spegazzini, 1910
- Wahlenbergiana Gueidan & Thüs, 2009
- Waihonghopes Yanna & K.D.Hyde, 2002
- Wardinella Bat. & Peres
- Waydora B.C.Sutton, 1976
- Websteromyces W.A.Baker & E.C.Partridge, 2000
- Weesea F.von Höhnel, 1920
- Weissia Bat. & M.P.Herrera
- Weufia D.J.Bhat & B.C.Sutton, 1985
- Witwateromyces D.H.Hallbauer, H.M.Jahns & K.T.van Warmelo, 1977
- Wolkia J.Ramsbottom, 1915
- Xenidiocercus T.R.Nag Raj, 1993
- Xenochora Petrak, 1948
- 拟异参孢属 Xenoheteroconium D.J.Bhat, W.B.Kendrick & T.R.Nag Raj, 1993
- 双色拟异参孢 Xenoheteroconium bicolor Bhat, W.B.Kendr. & Nag Raj[8]
- Xenokylindria F.DiCosmo, S.M.Berch & W.B.Kendrick, 1983
- Xenomyxa H.Sydow, 1939
- Xenopeltis H.Sydow & P.Sydow, 1919
- Xenoplaca Petrak, 1949
- Xenostroma F.von Höhnel, 1915
- Xeroconium D.L.Hawksworth, 1981
- Xiphomyces Syd. & P.Syd.
- Xiuguozhangia [9]
- Xylochia B.C.Sutton, 1983
- Xylocoryneum Saccardo
- Xylocreas
- Xyloglyphis F.E.Clements, 1909
- Xylohyphopsis W.A.Baker & Partridge, 2000
- Yalodendron Capriotti, 1962
- Yalomyces T.R.Nag Raj, 1993
- Yinmingella Goh et al.
- Ypsilomyces D.A.C.Almeida & Gusmão
- Yuccamyces Gour, Dyko & B.Sutton, 1979
- Zakatoshia B.Sutton
- Zamenhofia Clauzade & Cl.Roux, 1985
- Zebrospora E.H.C.McKenzie, 1991
- Zelandiocoela T.R.Nag Raj, 1993
- Zelodactylaria A.C.Cruz, Gusmão & R.F.Castañeda
- Zelopelta B.C.Sutton & R.D.Gaur, 1984
- Zelosatchmopsis Nag Raj, 1991
- Zelotetraploa J.S.Monteiro, Gusmão & R.F.Castañed
- Zelotriadelphia R.F.Castañeda, Saikawa, M.Stadler & Iturriaga, 2005
- Zernya Petr.
- Zetesimomyces T.R.Nag Raj, 1988
- Zevadia J.C.David & D.Hawksw.
- Zilingia Petrak, 1934
- Zinzipegasa T.R.Nag Raj, 1993
- Zopheromyces B.C.Sutton & C.S.Hodges Jr., 1977
- Zunura T.R.Nag Raj, 1993
- Zymonema Beurmann & Gougerot, 1909
- Zyxiphora B.C.Sutton, 1981
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