硅藻科（学名：Bacillariaceae）为硅藻目的一个科。
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本科包括以下属：[1]
- Allonitzschia A.Mann, 1925
- Allonitzschia munifica A.Mann, 1925
- Alveus I.Kaczmarska & G.A.Fryxell, 1996
- 硅藻属 Bacillaria J.F.Gmelin, 1788
- Crucidenticula F.Akiba & Y.Yanagisawa, 1986
- 筒柱藻属 Cylindrotheca L.Rabenhorst, 1859
- 波菱藻属 Cymatonitzschia R.Simonsen, 1974
- 海洋波菱藻 Cymatonitzschia marina (Lewin Simonsen,1974)
- Cymbellonitzschia F.Hustedt, 1924
- 细齿藻属 Denticula F.T.Kützing, 1844
- 拟细齿藻属 Denticulopsis R.Simonsen, 1979
- Denticulopsis barronii Yanagisawa & Akiba, 1990
- Denticulopsis crassa Yanagisawa & Akiba, 1990
- Denticulopsis delicata Yanagisawa & Akiba, 1990
- Denticulopsis ichikawae Yanagisawa & Akiba, 1990
- Denticulopsis katayamae Maruyama, 1984
- Denticulopsis maccollumii Simonsen, 1979
- Denticulopsis meridionalis Maruyama, 1992
- Denticulopsis miocenica (Schrader) Simonsen
- Denticulopsis okunoi Yanagisawa & Akiba, 1990
- Denticulopsis praedimorpha J.A.Barron ex F.Akiba
- Denticulopsis praehyalina Tanimura, 1989
- Denticulopsis praekatayamae Yanagisawa & Akiba, 1990
- Denticulopsis praelauta Akiba & Koizumi, 1985
- Denticulopsis simonsenii Yanagisawa & Akiba, 1990
- 塞米拟细齿藻 Denticulopsis seminae (Simonsen and KanayaSimonsen,1979)
- Denticulopsis tanimurae Yanagisawa & Akiba, 1990
- 拟脆杆藻属 Fragilariopsis F.Hustedt, 1913
- Giffenia F.E.Round & P.W.Basson, 1997
- 楔菱藻属 Gomphonitzschia A.Grunow, 1868
- Gomphotheca N.I.Hendey & P.A.Sims, 1982
- Grunowia L.Rabenhorst, 1864
- 菱板藻属 Hantzschia A.Grunow, 1877
- Neodenticula Akiba & Yanagisawa, 1986
- Neodenticula koizumii Akiba & Yanagisawa, 1985
- Neodenticula seminae (R.Simonsen & T.Kanaya) F.Akiba & Y.Yanagisawa, 1986
- 菱形藻属 Nitzschia A.H.Hassall, 1845
- Nitzschiella L.Rabenhorst, 1864
- Nitzshia
- Ophidocampa C.G.Ehrenberg, 1870
- Perrya F.Kitton, 1874
- Psammodictyon D.G.Mann, 1990
- Pseudo-nitzschia H.Peragallo, 1900
- Simonsenia H.Lange-Bertalot, 1979
- Simonsenia aveniformis Witkowski, Gomes & Gusev, 2015
- Simonsenia delicatula Michailov
- Simonsenia maolaniana You & Kociolek, 2015
- 盘杆藻属 Tryblionella W.Smith, 1853
