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月形單孢菌科 （學名：Selenomonadaceae）為月形單孢菌目的一科細菌。此科的模式屬為月形單孢菌屬(Selenomonas)。
本科包括以下屬：
- 厭氧弧菌屬 Anaerovibrio Hungate 1966
- 蜈蚣菌屬 Centipeda Lai et al. 1983
- 巨單胞菌屬 Megamonas Shah and Collins 1983
- 光岡菌屬 Mitsuokella Shah and Collins 1983
- 梳狀菌屬 Pectinatus Lee et al. 1978
- 丙酸螺菌屬 Propionispira Schink et al. 1983
- 施氏菌屬 Schwartzia van Gylswyk et al. 1997
- Selenobaculum Yeo et al. 2024
- Selenobaculum gbiensis Yeo et al. 2023
- Selenobaculum gibii Yeo et al. 2024[1]
- 月形單孢菌屬 Selenomonas von Prowazek 1913
- 嗜發酵菌屬 Zymophilus Schleifer et al. 1990
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