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本科包括以下屬：[1]
- Acrobelione Bourdon, 1981
- Albunione Markham & Boyko, 1999
- Albunione australiana Markham & Boyko, 1999
- Albunione indecora (Markham, 1988)
- Albunione yoda Markham & Boyko, 2003
- Allathelges Kazmi & Markham, 1999
- Allobopyrus Bourdon, 1983
- Allodiplophryxus Markham, 1985
- Allokepon Markham, 1982
- Allokepon hendersoni (Giard & Bonnier, 1888)[2]
- Allokepon longicauda Duan, An & Yu, 2008
- Allokepon monodi (Bourdon, 1967)
- Allokepon sinensis (Danforth, 1972)
- Allokepon tiariniae (Shiino, 1937)
- Allorbimorphus Bourdon, 1976
- Anacepon Nierstrasz & Brender
- Anathelges Bonnier, 1900
- Anchiarthrus Markham, 1992
- Anisarthrus Giard, 1907
- Anisorbione Bourdon, 1981
- Anomophryxus Shiino, 1937
- Anuropodione Bourdon, 1967
- Apocepon Nierstrasz & Brender
- Apophrixus Nierstrasz & Brender
- Aporobopyrina Shiino, 1934
- Aporobopyroides Nobili, 1906
- Aporobopyrus Nobili, 1906
- Argeia Dana, 1853，異名：Argeia Pingi Yu, 1935
- Argeiopsis Kensley, 1974
- Astalione Markham, 1975
- Asymmetrione Codreanu, Codreanu & Pike, 1965
- Asymmetrorbione Boyko, 2003
- Athelges Gerstaecker, 1862
- Atypocepon Nierstrasz & Brender
- Azygopleon Markham, 1985
- Balanopleon Markham, 1974
- Bathione Román-Contreras & Boyko, 2007
- 深海鰓虱屬 Bathygyge Hansen, 1897
- Bopyrella Bonnier, 1900
- 藻蝦鰓虱屬 Bopyrina Kossmann, 1881
- 短藻蝦鰓虱 Bopyrina abbreviata Richardson, 1904
- Bopyrina choprai Nierstrasz & Brender
- Bopyrina gigas Nierstrasz & Brender
- Bopyrina latreuticola Gissler
- Bopyrina ocellata (Czerniavsky, 1868)
- Bopyrina platylobae Bourdon, 1983
- Bopyrina sewelli Chopra, 1930
- Bopyrinella Nierstrasz & Brender
- Bopyrinina Shiino, 1933
- Bopyrione Bourdon & Markham, 1980
- Bopyrissa Nierstrasz & Brender
- 單枝鰓虱屬 Bopyroides Stimpson, 1864
- Bopyroides cluthae (Scott, 1902)
- 藻蝦單枝鰓虱 Bopyroides hippolytes (Kröyer, 1838)
- Bopyroides shiinoi Rybakov & Avdeev, 1991
- Bopyrophryxus Codreanu, 1965
- Bopyrosa Nierstrasz & Brender
- Bopyrus Latreille, 1802
- Cancricepon Giard & Bonnier, 1887
- Capitetragonia Pearse, 1953
- Carcinione Bourdon, 1983
- Cardiocepon Nobili, 1906
- Castrione Brasil Lima, 1980
- Cataphryxus Shiino, 1936
- Claustrathelges Williams & Boyko, 2016
- Coxalione Bourdon, 1977
- Cryptobopyrus Schultz, 1977
- Dactylokepon Stebbing, 1910
- Dicropleon Markham, 1972
- Diplophryxus Richardson, 1904
- Discomorphus Markham, 2008
- Discorsobopyrus Boyko, 2004
- Eophrixus Caroli, 1930
- Epicepon Boyko & Williams, 2021
- Epipenaeon Nobili, 1906
- Epiphrixus Nierstrasz & Brender
- Eragia Markham, 1994
- Eremitione Williams, Boyko & Madad, 2019
- Ergyne Risso, 1816
- Eriphrixus Markham, 1990
- Falsanathelges Boyko & WIlliams, 2003
- Filophryxus Bruce, 1972
- Galathocrypta Román-Contreras & Soto, 2002
- Gareia Bourdon & Bruce, 1983
- 巨鰓虱屬 Gigantione Kossmann, 1881
- Goleathopseudione Román-Contreras, 2008
- Grapsicepon Giard & Bonnier, 1887
- Gyge Cornalia & Panceri, 1861
- Hemiarthrus Giard & Bonnier, 1887
- Hemicepon Lemos de Castro & Brasil-Lima, 1980
- Hemiphryxus Bruce, 1978
- Heterocepon Shiino, 1936
- Hypercepon Danforth, 1972
- Hyperphrixus Nierstrasz & Brender
- Hypocepon Nierstrasz & Brender
- Hypohyperphrixus Nierstrasz & Brender
- Ionella Bonnier, 1900
- Izuohshimaphryxus Saito, 2015
- Kepon Duvernoy, 1840
- Kolourione Markham, 1978
- Leidya Cornalia & Panceri, 1861
- Litobopyrus Markham, 1982
- Loki Markham, 1972
- Mediophrixus Markham, 1990
- Megacepon George, 1947
- Mesocepon Shiino, 1951
- Mesophryxus Bruce, 1973
- Metacepon Nierstrasz & Brender
- Metaphrixus Nierstrasz & Brender
- Metathelges Nierstrasz & Brender
- Micropodiphryxus Boyko, 2012
- Minicopenaeon Bourdon, 1981
- Minimathelges Boyko & Williams, 2003
- Miophrixus Barnard, 1955
- Munidion Hansen, 1897
- Neophryxus Bruce, 2007
- Nikione Kensley, 1974
- Ogyridione Markham, 1988
- Onkokepon An, H.Yu & Li, 2006
- Onychocepon Pérez, 1921
- Orbimorphus Richardson, 1910
- Orbione Bonnier, 1900
- Orophryxus Bruce, 1972
- Orthione Markham, 1988
- Ovobopyrus Markham, 1985
- Ovoionella Boyko, 2004
- 寄居蟹鰓虱屬 Pagurion Shiino, 1933
- Paguristione An, Zhao & Markham, 2016
- Pagurocryptella Boyko & Williams, 2010
- Palaemonellione Markham, 1989
- Parabopyrella Markham, 1985
- Parabopyriscus Markham, 1985
- Parabopyrus Shiino, 1934
- Paracepon Nierstrasz & Brender
- Paraeragia An, Zhang & Paulay, 2017
- Paragigantione Barnard, 1920
- Paranikione An, Boyko & Li, 2015
- Parapagurion Shiino, 1933
- Parapenaeon Richardson, 1904
- Parapenaeonella Shiino, 1949
- Parapleurocrypta Chopra, 1923
- Parapleurocrypta alphei Chopra, 1923
- Parapleurocrypta digitata Bourdon, 1976
- Parapleurocrypta duofratres Horch, Williams & Terossi, 2024[3]
- Parapleurocryptella Bourdon, 1972
- Parapseudione Nierstrasz & Brender
- Parargeia Hansen, 1897
- Parasymmetrione An, Markham & H.Yu, 2010
- Parasymmetrorbione An, Boyko & Li, 2013
- Parathelges Bonnier, 1900
- Parione Richardson, 1910
- Parionella Nierstrasz & Brender
- Parionina Nierstrasz & Brender
- Parioninella Nierstrasz & Brender
- Pauperella Nierstrasz & Brender
- Phyllodurus Stimpson, 1857
- Pleonobopyrus Saito & Moritaki, 2020
- Pleurocrypta Hesse, 1865
- Pleurocryptella Bonnier, 1900
- Pleurocryptina Nierstrasz & Brender
- Pliophrixus Caroli, 1930
- Pontobopyrus Markham, 1979
- Probopyrinella Nierstrasz & Brender
- Probopyrione Bourdon, 1983
- Probopyriscus Markham, 1982
- Probopyrus Giard & Bonnier, 1888
- Probynia Bourdon & Bruce, 1983
- Procepon Shiino, 1937
- Progebiophilus Codreanu & Codreanu, 1963
- Propseudione Shiino, 1933
- Pseudione Kossmann, 1881
- Pseudionella Shiino, 1949
- Pseudostegias Shiino, 1933
- Quadripediphryxus Saito, 2020
- Rhopalione Pérez, 1920
- Robinione Boyko, Williams & Shields, 2017
- Schizobopyrina Markham, 1985
- Scyracepon Tattersall, 1905
- Septembopyrina An, Boyko & Li, 2015
- Shiinoella Bourdon, 1972
- Sigyn An, Boyko & Li, 2015
- Spathione Boyko & van der Meij, 2018
- Stegias Richardson, 1904
- Stegoalpheon Chopra, 1923
- Stegoargeia An, Boyko & Li, 2015
- Synsynella Hay, 1917
- Trapezicepon Bonnier, 1900
- Tylokepon Stebbing, 1904
- Upogebione Markham, 1985
- Upogebiophilus Nobili, 1906
- Urobopyrus Richardson, 1904
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