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微小噬菌體科（學名：Microviridae）為微噬菌體目的一個科。
本科包括以下屬：[1]
- Alpha3microvirus
- Alphatrevirus
- Bdellomicrovirus
- Chlamydiamicrovirus
- Enterogokushovirus
- G4microvirus
- Gequatrovirus
- 微小噬菌體屬 Microvirus
- Phix174microvirus
- Sinsheimervirus
- Spiromicrovirus
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