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Mikrofloora on mikroorganismide kogum mingis paigas.
Näiteks jämesooles elavate mikroorganismide kogumit nimetatakse jämesoole mikroflooraks.
Mulla mikroflooraks nimetatakse mulla mikroorganismide (bakterite, seente|) kogumit suurusega alla 10 μm.[1] Väikeste loomade (algloomade, nematoodide) kogumit suurusega 10–100 μm nimetatakse mikrofaunaks.[1]
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