Pyrococcus

Pyrococcus is a genus of Thermococcaceaen archaean.^[1]

Pyrococcus
Pyrococcus furiosus
Scientific classification
Domain:	Archaea
Kingdom:	Euryarchaeota
Phylum:	Euryarchaeota
Class:	Thermococci
Order:	Thermococcales
Family:	Thermococcaceae
Genus:	Pyrococcus Fiala and Stetter 1986
Type species
Pyrococcus furiosus Fiala and Stetter 1986
Species
"P. abyssi" "P. chitonophagus" "P. endeavori" P. furiosus P. glycovorans P. horikoshii P. kukulkanii P. woesei P. yayanosii

Description and significance

Pyrococcus has similar characteristics of other thermoautotrophican archaea such as Archaeoglobus, and Methanococcus in the respect that they are all thermophilic and anaerobic. Pyrococcus differs, however, because its optimal growth temperature is nearly 100 °C and dwells at a greater sea depth than the other archaea. Studying Pyrococcus helps give insight to possible mechanisms used to endure extreme environmental conditions like high temperatures and high pressure.

Phylogeny

16S rRNA based LTP_06_2022[2][3][4]	53 marker proteins based GTDB 08-RS214[5][6][7]
Pyrococcus P. yayanosii P. horikoshii P. furiosus P. woesei Zillig et al. 1988 P. kukulkanii "P. chitonophagus" P. glycovorans Barbier et al. 1999	Pyrococcus P. yayanosii Birrien et al. 2011 P. furiosus Fiala & Stetter 1986 "P. abyssi" Erauso et al. 1993 P. horikoshii Gonzlez et al. 1999 P. kukulkanii Callac et al. 2016 "P. chitonophagus" (Huber & Stetter 1996) Lepage et al. 2004

Genome structure

Three of the Pyrococcus species have been sequenced. P. furiosus is the largest containing 1.9 Mb followed by P. abyssi with 1.8 Mb and P. horikoshii with 1.7 Mb.^{[citation needed]} The genomes encode for many different metabolic enzymes which gives themselves a wider spectrum of living conditions because they can transport and metabolize a wide range of organic substances. Variation was detected between species as well.

Cell structure and metabolism

The cells of Pyrococcus are about 0.8–2 μm and are slightly irregular cocci in shape. They show a polar grouping of flagella and are enveloped by an S-layer enclosing a periplasmic space around the cytoplasmic membrane. Pyrococcus species are anaerobic but vary slightly concerning their metabolism. Peptide fermentation is the principle metabolic pathway however, growth has been observed for P. furiosus and P. abyssi on starch, maltose, and pyruvate but not for P. horikoshii. While the presence of elemental sulfur is not needed for growth, growth is enhanced with the addition of S^o. ^{[citation needed]}

Ecology

Pyrococcus species inhabit environments with extremely high temperatures such as hydrothermal vents. Optimal growth conditions include a pH level of about 7, a salt concentration around 2.5%, and a temperature around 98 °C. Growing in temperatures this high, it is easy to see why they are anaerobic since at these boiling temperatures hardly any oxygen will be available. In the example of Hydrothermal vents, where P. abyssi has been found, there is no sunlight and the pressure is around 200 atm in addition to the extremely high temperature.

See also

• List of Archaea genera

References

1. See the NCBI webpage on Pyrococcus. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information. Retrieved 2007-03-19.
2. "The LTP". Retrieved 10 May 2023.
3. "LTP_all tree in newick format". Retrieved 10 May 2023.
4. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
5. "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
6. "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
7. "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

Further reading

• Elshawadfy, Ashraf M.; Keith, Brian J.; Ooi, H'Ng Ee; Kinsman, Thomas; et al. (27 May 2014). "DNA polymerase hybrids derived from the family-B enzymes of Pyrococcus furiosus and Thermococcus kodakarensis: improving performance in the polymerase chain reaction". Frontiers in Microbiology. 5: 224–. doi:10.3389/fmicb.2014.00224. PMC 4034419. PMID 24904539.
• Fiala G; Stetter KO (1986). "Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100 °C". Arch. Microbiol. 145: 56–61. doi:10.1007/BF00413027. S2CID 41589578.
• Zillig W; Holz I; Klenk HP; Trent J; et al. (1987). "Pyrococcus woesei, sp. nov., an ultra-thermophilic marine Archaebacterium, representing a novel order, Thermococcales". Syst. Appl. Microbiol. 9 (1–2): 62–70. doi:10.1016/S0723-2020(87)80057-7.