SMARCA1

Vjerovatni globalni transcripcijski aktivator SNF2L1 jest protein koji je kod ljudi kodiran genom SMARCA1.^[5][6][7]

SMARCA1
Identifikatori
Aliasi	SMARCA1
Vanjski ID-jevi	OMIM: 300012 MGI: 1935127 HomoloGene: 55711 GeneCards: SMARCA1
Lokacija gena (čovjek) Hrom. Hromosom X[1] Bend Xq25-q26.1 Početak 129,446,501 bp[1] Kraj 129,523,500 bp[1]
Lokacija gena (miš) Hrom. Hromosom X (miš)[2] Bend X|X A4 Početak 46,898,245 bp[2] Kraj 46,981,851 bp[2]
Obrazac RNK ekspresije Više referentnih podataka o ekspresiji
Ontologija gena Molekularna funkcija • ATP-dependent DNA/DNA annealing activity • vezivanje sa DNK • nucleotide binding • ATP-dependent activity, acting on DNA • GO:0008026 helicase activity • GO:0102490, GO:0102491, GO:0102489, GO:0102488, GO:0102487, GO:0102486, GO:0102485 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides • GO:0001948, GO:0016582 vezivanje za proteine • nucleic acid binding • nucleosome binding • hydrolase activity • ATP binding • transcription factor binding • ATPase activity • GO:0001200, GO:0001133, GO:0001201 DNA-binding transcription factor activity, RNA polymerase II-specific Ćelijska komponenta • CERF complex • jedro • nukleoplazma • intracellular membrane-bounded organelle • NURF complex Biološki proces • chromatin remodeling • GO:0009373 regulation of transcription, DNA-templated • transcription, DNA-templated • GO:0060469, GO:0009371 positive regulation of transcription, DNA-templated • brain development • neuron differentiation • GO:0031497, GO:0006336, GO:0034724, GO:0001301, GO:0007580, GO:0034652, GO:0010847 chromatin organization • GO:0044324, GO:0003256, GO:1901213, GO:0046019, GO:0046020, GO:1900094, GO:0061216, GO:0060994, GO:1902064, GO:0003258, GO:0072212 regulation of transcription by RNA polymerase II • GO:0003257, GO:0010735, GO:1901228, GO:1900622, GO:1904488 positive regulation of transcription by RNA polymerase II Izvori:Amigo / QuickGO
Ortolozi
Vrste	Čovjek	Miš
Entrez	6594	93761
Ensembl	ENSG00000102038	ENSMUSG00000031099
UniProt	P28370	Q6PGB8
RefSeq (mRNK)	NM_001282874 NM_001282875 NM_003069 NM_139035 NM_001378261 NM_001378262 NM_001378263 NM_001378264	NM_001290708 NM_053123 NM_001358618 NM_001358619
RefSeq (bjelančevina)	NP_001269803 NP_001269804 NP_003060 NP_001365190 NP_001365191 NP_001365192 NP_001365193	NP_001277637 NP_444353 NP_001345547 NP_001345548
Lokacija (UCSC)	Chr X: 129.45 – 129.52 Mb	Chr X: 46.9 – 46.98 Mb
PubMed pretraga	[3]	[4]
Wikipodaci
Pogledaj/uredi – čovjek Pogledaj/uredi – miš

Protein koji je kodiran ovim genom član je porodice proteina SWI/SNF. Članovi ove porodice imaju helikazne i ATPaznu aktivnost i smatra se da reguliraju transkripciju određenih gena mijenjajući strukturu hromatina oko njih. Za ovaj gen pronađene su dvije varijante transkripta koje kodiraju različite izoforme.^[7]

Reference

1. GRCh38: Ensembl release 89: ENSG00000102038 - Ensembl, maj 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000031099 - Ensembl, maj 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Okabe I, Bailey LC, Attree O, Srinivasan S, Perkel JM, Laurent BC, Carlson M, Nelson DL, Nussbaum RL (Oct 1992). "Cloning of human and bovine homologs of SNF2/SWI2: a global activator of transcription in yeast S. cerevisiae". Nucleic Acids Res. 20 (17): 4649–55. doi:10.1093/nar/20.17.4649. PMC 334196. PMID 1408766.
6. Barak O, Lazzaro MA, Lane WS, Speicher DW, Picketts DJ, Shiekhattar R (Nov 2003). "Isolation of human NURF: a regulator of Engrailed gene expression". EMBO J. 22 (22): 6089–100. doi:10.1093/emboj/cdg582. PMC 275440. PMID 14609955.
7. "Entrez Gene: SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1".

Dopunska literatura

• Bozhenok L, Wade PA, Varga-Weisz P (2002). "WSTF-ISWI chromatin remodeling complex targets heterochromatic replication foci". EMBO J. 21 (9): 2231–41. doi:10.1093/emboj/21.9.2231. PMC 125993. PMID 11980720.
• Maguire PB, Wynne KJ, Harney DF, et al. (2003). "Identification of the phosphotyrosine proteome from thrombin activated platelets". Proteomics. 2 (6): 642–8. doi:10.1002/1615-9861(200206)2:6<642::AID-PROT642>3.0.CO;2-I. PMID 12112843.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
• Barak O, Lazzaro MA, Cooch NS, et al. (2004). "A tissue-specific, naturally occurring human SNF2L variant inactivates chromatin remodeling". J. Biol. Chem. 279 (43): 45130–8. doi:10.1074/jbc.M406212200. PMID 15310751.
• Wang F, Zhang R, Beischlag TV, et al. (2004). "Roles of Brahma and Brahma/SWI2-related gene 1 in hypoxic induction of the erythropoietin gene". J. Biol. Chem. 279 (45): 46733–41. doi:10.1074/jbc.M409002200. PMID 15347669.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Banting GS, Barak O, Ames TM, et al. (2005). "CECR2, a protein involved in neurulation, forms a novel chromatin remodeling complex with SNF2L". Hum. Mol. Genet. 14 (4): 513–24. doi:10.1093/hmg/ddi048. PMID 15640247.
• Ross MT, Grafham DV, Coffey AJ, et al. (2005). "The DNA sequence of the human X chromosome". Nature. 434 (7031): 325–37. doi:10.1038/nature03440. PMC 2665286. PMID 15772651.
• Lazzaro MA, Pépin D, Pescador N, et al. (2006). "The imitation switch protein SNF2L regulates steroidogenic acute regulatory protein expression during terminal differentiation of ovarian granulosa cells". Mol. Endocrinol. 20 (10): 2406–17. doi:10.1210/me.2005-0213. PMID 16740656.