 | Ovaj članak ili neki od njegovih odlomaka nije dovoljno potkrijepljen izvorima (literatura, veb-sajtovi ili drugi izvori). |
Prve utakmice druge runde Evropske lige igrale su se 15. i 16. jula, a uzvratne 23. jula 2009. godine.
| Tim 1 | Ukupni rezultat | Tim 2 | Prva utakmica | Druga utakmica | |
|---|---|---|---|---|---|
| 1 | Rosenborg Trondheim  | 0-1 |  FK Qarabağ Ağdam | 0-0 | 0-1 |
| 2 | FC Paços Ferreira  | 1-0 |  Zimbru Chişinău | 0-0 | 1-0 |
| 3 | Polonia Varšava  | 5-0 |  A.C. Juvenes/Dogana | 1-0 | 4-0 |
| 4 | SK Sturm Graz  | 3-2 |  NK Široki Brijeg | 2-1 | 1-1 |
| 5 | FC Basel  | 7-1 |  FC Santa Coloma | 3-0 | 4-1 |
| 6 | FC Honka Espoo  | 3-0 |  Bangor City | 2-0 | 1-0 |
| 7 | MŠK Žilina  | 3-0 | FC Dacia Chişinău | 2-0 | 1-0 |
| 8 | Anorthosis Famagusta  | 3-4 |  OFK Petrovac | 2-1 | (1-2) 1-3 1 |
| 9 | St Patrick's Athletic  | 2-1 |  FC Valletta | 1-1 | 1-0 |
| 10 | Omonia Nikosia | 8-1 |  HB Tórshavn | 4-0 | 4-1 |
| 11 | ND Gorica  | 1-2 | FC Lahti | 1-0 | 0-2 |
| 12 | SK Sigma Olomouc  | 3-1 |  Fram Reykjavík | 1-1 | 2-0 |
| 13 | Legia Varšava | 4-0 |  Olimpi Rustawi | 3-0 | 1-0 |
| 14 | FC Falkirk  | 1-2 |  FC Vaduz | 1-0 | (0-1) 0-2 1 |
| 15 | IF Elfsborg  | 3-0 |  Haladás Szombathely | 3-0 | 0-0 |
| 16 | Rapid Beč | 8-0 |  Vllaznia Shkodër | 5-0 | 3-0 |
| 17 | Naftan Nawapolazk  | 2-2 |  KAA Gent2 | 2-1 | 0-1 |
| 18 | Liepājas Metalurgs  | 3-4 | Dinamo Tiflis | 2-1 | 1-3 |
| 19 | FC Differdange 03  | 1-3 |  HNK Rijeka | 1-0 | 0-3 |
| 20 | Sūduva Marijampolė  | 1-2 |  Randers FC | 0-1 | 1-1 |
| 21 | Vėtra Vilnius | 3-2 | HJK Helsinki | 0-1 | 3-1 |
| 22 | Milano Kumanovo  | 2-12 | NK Slaven Belupo Koprivnica | 0-4 | 2-8 |
| 23 | FK Dinamo Minsk | 1-4 | Tromsø IL | 0-0 | 1-4 |
| 24 | KR Reykjavík | 3-1 |  AE Larisa | 2-0 | 1-1 |
| 25 | Brøndby IF | 4-2 |  FC Flora Tallinn | 0-1 | 4-1 |
| 26 | Aalborg BK | 1-3 | FK Slavija Sarajevo | 0-0 | 1-3 |
| 27 | Steaua Bukurešt  | 4-1 | Újpest Budimpešta | 2-0 | 2-1 |
| 28 | Metalurg Donezk  | 5-1 | MTZ-RIPA Minsk | 3- 0 | 2-1 |
| 29 | FK Rabotnički | 5-3 |  Crusaders FC | 1-1 | 4-2 |
| 30 | Bnei Yehuda Tel-Aviv  | 5-0 | Dinaburg Daugavpils | 4-0 | 1-0 |
| 31 | NAC Breda  | 8-0 |  Gandsassar Kapan | 6-0 | 2-0 |
| 32 | Černo More Varna  | 4-0 | FC Iskra-Stali Rîbniţa | 1-0 | 3-0 |
| 33 | FBK Kaunas | 1-1 |  FK Sevojno 2 | 0-0 | 1-1 |
| 34 | KS Flamurtari Vlorë | 2-8 | FC Motherwell | 1-0 | 1-8 |
| 35 | FC Sestaponi | 3-4 | Helsingborgs IF | 1-2 | (2-1) 2-2 1 |
| 36 | Skonto Riga | 1-2 | Derry City | 1-1 | 0-1 |
| 37 | Sliema Wanderers | 0-3 | Maccabi Netanya | 0-0 | 0-3 |
| 38 | Tobyl Qostanai  | 1-3 |  Galatasaray | 1-1 | 0-2 |
| 39 | Rudar Velenje | 0-5 | Crvena zvezda | 0-1 | 0-4 |
| 40 | FK Sarajevo | 2-1 | FC Spartak Trnava | 1-0 | 1-1 |
1 Utakmica odlučena nakon produčetaka. Rezultat u zagradi je nakon regularnih 90 minuta igre.
2 U treću rundu kvalifikovali su se timovi zbog više postignutih golova u gostima.
U treću rundu kvalifikacija plasiraju se pobjednici iz dvije utakmice.
![[icon]](#/media/Datoteka:Wiki_letter_w_cropped.svg){kind=small} | Ovaj odlomak potrebno je proširiti. |
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