舟形藻科（學名：Naviculaceae）是矽藻綱舟形藻目的一科硅藻。
舟形藻科包括以下各屬[1]：
- Adlafia G.Moser, H.Lange-Bertalot & D.Metzeltin, 1998
- Altana M.S.Kulikovskiy, H.Lange-Bertalot & D.Metzeltin, 2012
- Alveovallum H.Lange-Bertalot & K.Krammer, 2000
- Amicula A.Witkowski, H.Lange-Bertalot & D.Metzeltin, 2000
- 雙肋藻屬 Amphipleura
- 繭形藻屬 Amphiprora
- 雙眉藻屬 Amphora
- 異菱藻屬 Anomoeoneis
- Astartiella A.Witkowski, H.Lange-Bertalot & D.Metzeltin, 1998
- Austariella A.Witkowski, H.Lange-Bertalot & D.Metzeltin, 2000
- Baikalia L.N.Bukhtiyarova & G.V.Pomazkina, 2013
- Berkella R.Ross & P.A.Sims, 1978
- Buryatia M.S.Kulikovskiy, H.Lange-Bertalot & D.Metzeltin, 2012
- 美壁藻屬 Caloneis P.T.Cleve, 1894
- 箱形藻屬 Cistula
- Corbellia N.I.Maidana & F.E.Round, 1999[2]
- Corbellia contorta N.Miadana & F.E.Round, 1999
- Craticula
- Cymatoneis P.T.Cleve, 1894
- Cymatoneis circumvallata Cleve, 1894
- Cymatoneis definita Mann, 1925
- Cymatoneis lacunata Mann, 1925
- Cymatoneis margarita A.Witkowski, 2000
- Cymatoneis ovalis Heiden, 1928
- Cymatoneis sufflata Mann, 1925
- 具槽波状藻 Cymatoneis sulcata (Grev. Cleve,1894)
- 網形藻屬 Dictyoneis
- 雙壁藻屬 Diploneis
- Fallacia
- Fistulifera H.Lange-Bertalot, 1997
- Fistulifera alcalina[3]
- Fistulifera solaris S.Mayama, M.Matsumoto, K.Nemoto & T.Tanaka, 2014
- 肋縫藻屬 Frustulia
- Geissleria
- 布紋藻屬 Gyrosigma
- Halamphora
- Luticola
- Lyrella
- 胸隔藻屬 Mastogloia
- Meuniera
- 舟形藻屬 Navicula
- Neidiopsis H.Lange-Bertalot & D.Metzeltin, 1999
- Neidiopsis hamiltonii L.Bahls, 2014[4]
- Neidiopsis levanderi [4]
- Neidiopsis weilandii L.Bahls, 2014[4]
- Neidiopsis wulffii [4]
- 長蓖藻屬 Neidium
- 奧斯藻屬 Oestrupia
- Petroneis
- 羽紋藻屬 Pinnularia
- 斜紋藻屬 Pleurosigma
- Psammothidium
- 叉縫藻屬 Raphidivergens
- Sabbea Van de Vijver, Bishop & Kopalová, 2019
- Sabbea adminensis (D.Roberts & McMinn) Van de Vijver, Bishop & Kopalová, 2019[5]
- 旋軸藻屬 Scoliopleura
- 彎雙眉藻屬 Seminavis
- 輻節藻屬 Stauroneis
- 粗紋藻屬 Trachyneis
- 龍骨藻屬 Tropidoneis
- Undatella
Maidana, N.I. & Round, F.E. (1999). Corbellia contorta gen. & sp. nov. (Bacillariophyceae). A new diatom genus from Santa Cruz Province (Argentina). Diatom Research, 14(2): 331-336
David E. Berthold, Thomas Frankovich, Evelyn E. Gaiser & H. Dail Laughinghouse IV (2020) Fistulifera alcalina sp. nov. (Naviculales, Stauroneidaceae) a new alkaliphilic diatom species from Lake Okeechobee, Florida (USA), Diatom Research, 35:3, 301-311, DOI: 10.1080/0269249X.2020.1801517
Loren L. Bahls (2014) Neidiopsis hamiltonii sp. nov., N. weilandii sp. nov., N. levanderi and N. wulffii from western North America, Diatom Research, 29:4, 371-386, DOI: 10.1080/0269249X.2014.889606
Bishop Jordan,Kopalova Katerina,Darling Joshua P.,Schulte Nicholas O.,Kohler J.,McMinn Andrew,Spaulding Sarah A.,Mcknight Diane M.,Van De Vijver Bart．Sabbea gen. nov., a new diatom genus (Bacillariophyta) from continental Antarctica[J]．Phytotaxa,2019,418(1)
