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中慢生根瘤菌属（学名：Mesorhizobium）也称中间根瘤菌属，为叶杆菌科的一属细菌。该属的模式种为百脉根中慢生根瘤菌（Mesorhizobium loti）。
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本属包括以下物种：
- Mesorhizobium abyssinicae Degefu et al. 2013
- Mesorhizobium acaciae Zhu et al. 2015
- Mesorhizobium albiziae Wang et al. 2007
- Mesorhizobium alhagi Chen et al. 2010
- 紫穗槐中间根瘤菌 Mesorhizobium amorphae Wang et al. 1999,紫穗槐中慢生根瘤菌
- Mesorhizobium atlanticum Ferraz Helene et al. 2019
- Mesorhizobium australicum Nandasena et al. 2009
- Mesorhizobium calcicola De Meyer et al. 2016
- Mesorhizobium camelthorni Chen et al. 2011
- Mesorhizobium cantuariense De Meyer et al. 2015
- Mesorhizobium caraganae Guan et al. 2008
- Mesorhizobium carbonis Li et al. 2019
- Mesorhizobium carmichaelinearum De Meyer et al. 2019
- Mesorhizobium chacoense Velázquez et al. 2001
- Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997
- Mesorhizobium composti Lin et al. 2020
- Mesorhizobium delmotii Mohamad et al. 2018
- Mesorhizobium ephedrae Liu et al. 2018
- Mesorhizobium erdmanii Martínez-Hidalgo et al. 2015
- Mesorhizobium escarrei Mohamad et al. 2022[1]
- Mesorhizobium gobiense Han et al. 2008
- Mesorhizobium hankyongi Siddiqi et al. 2019[2]
- Mesorhizobium hawassense Degefu et al. 2013
- Mesorhizobium helmanticense Marcos-García et al. 2017
- 华癸中慢生根瘤菌 Mesorhizobium huakuii (Chen et al. 1991) Jarvis et al. 1997，华癸根瘤菌，华癸中生根瘤菌
- Mesorhizobium intechi Estrella et al. 2024[3]
- 日本中间根瘤菌 Mesorhizobium japonicum Martínez-Hidalgo et al. 2016
- Mesorhizobium jarvisii Martínez-Hidalgo et al. 2015
- Mesorhizobium kowhaii De Meyer et al. 2016
- Mesorhizobium liriopis Kim et al. 2023[4]
- 百脉根中慢生根瘤菌 Mesorhizobium loti (Jarvis et al. 1982) Jarvis et al. 1997
- Mesorhizobium mediterraneum (Nour et al. 1995) Jarvis et al. 1997
- 地中海中慢生根瘤菌 Mesorhizobium metallidurans Vidal et al. 2009
- Mesorhizobium microcysteis Jung et al. 2021[5]
- Mesorhizobium muleiense Zhang et al. 2012
- 新西兰中慢生根瘤菌 Mesorhizobium newzealandense De Meyer et al. 2016
- Mesorhizobium norvegicum Kabdullayeva et al. 2020
- 大洋中间根瘤菌 Mesorhizobium oceanicum Fu et al. 2017，为Aquibium oceanicum (Fu et al. 2017) Kim et al. 2022的异名
- Mesorhizobium olivaresii Lorite et al. 2017
- Mesorhizobium onobrychidis Ashrafi et al. 2023[6]
- Mesorhizobium opportunistum Nandasena et al. 2009
- Mesorhizobium plurifarium de Lajudie et al. 1998
- Mesorhizobium prunaredense Mohamad et al. 2018
- 樊庆笙中慢生根瘤菌 Mesorhizobium qingshengii Zheng et al. 2013[7]，以土壤微生物学家樊庆笙的名字命名，他是中国第一位研究从黄芪窦分离的根瘤菌的微生物学家之一
- Mesorhizobium robiniae Zhou et al. 2010
- Mesorhizobium sangaii Zhou et al. 2013
- Mesorhizobium sanjuanii Sannazzaro et al. 2018
- Mesorhizobium sediminum Yuan et al. 2016
- Mesorhizobium septentrionale Gao et al. 2004
- 香格里拉中间根瘤菌 Mesorhizobium shangrilense Lu et al. 2009
- Mesorhizobium shonense Degefu et al. 2013
- Mesorhizobium silamurunense Zhao et al. 2012
- 土壤中间根瘤菌 Mesorhizobium soli Nguyen et al. 2015
- Mesorhizobium sophorae De Meyer et al. 2016
- Mesorhizobium tamadayense Ramírez-Bahena et al. 2012
- Mesorhizobium tarimense Han et al. 2008
- 温暖区中间根瘤菌 Mesorhizobium temperatum Gao et al. 2004[8]
- Mesorhizobium terrae Jung et al. 2021
- Mesorhizobium thiogangeticum Ghosh and Roy 2006
- 天山中慢生根瘤菌 Mesorhizobium tianshanense (Chen et al. 1995) Jarvis et al. 1997
- Mesorhizobium ventifaucium Mohamad et al. 2022[9]
- Mesorhizobium waimense De Meyer et al. 2015
- Mesorhizobium waitakense De Meyer et al. 2016
- 文新中慢生根瘤菌 Mesorhizobium wenxiniae Zhang et al. 2018，以土壤生物学家，中国科学院院士陈文新的名字命名
- 新疆中慢生根瘤菌 Mesorhizobium xinjiangense Meng et al. 2021
- 张掖中慢生根瘤菌 Mesorhizobium zhangyense u et al. 2018
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