下屬分類
本門包括以下綱：
- Anaeromonadea
- Carpediemonadea
- Retortamonadea
- Trepomonadea
- Trichomonadea
- Trichonymphea
- 綱、目和科的地位未定的屬：
- Barthelona Bernard, Simpson & Patterson, 2000
參考文獻
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