多甲藻目（學名：Peridiniales）為藻類植物之一植物目。該植物於植物分類表上，歸於甲藻門 (Pyrrophyta)橫裂甲藻綱（Dinophyceae），同綱者尚有變形甲藻目（Dinamoebidiales）等。
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本目包括以下科：[1]
- Amphidiniopsidaceae
- Archaeperidinium Jörgensen, 1912
- Archaeperidinium bailongense T. Liu, K.N. Mertens et H. Gu 2015
- Archaeperidinium minutum (Kof.) Jørg.
- Archaeperidinium saanichi Mertens, Yamaguchi, Kawami et Matsuoka, 2012
- Herdmania
- Archaeosphaerodiniopsidaceae
- Archaesphaerodiniopsidaceae
- Calciodinellaceae
- Centrodiniaceae Hernández-Becerril, 2010
- Centrodinium Kofoid 1907，模式屬
- Centrodinium biconicum (G.Murray & Whitting) F.J.R.Taylor
- Centrodinium deflexoides Balech, 1962
- Centrodinium elongatum Kofoid, 1907
- Centrodinium eminens Boelm, 1933
- Centrodinium intermedium Pavill.
- Centrodinium maximun Pavillard, 1930
- Centrodinium pavillardii F.J.R.Taylor
- Centrodinium pulchrum Boehm., 1933
- Centrodinium punctatum (Cleve) J.F.R.Taylor
- Ceratocorythaceae
- Ceratoperidiniaceae
- Kirithra Boutrup, Moestrup, Tillmann & Daugbjerg, 2017
- Kirithra asteri Boutrup, Tillmann, Daugbjerg et Moestrup 2017，模式種
- Kirithra sigma Z.X.Hu, Zhun Li, H.H.Shin et Y.Z.Tang 2020
- Pseliodinium Sournia, 1972
- Torquentidium H.H.Shin, Z.Li, K.W.Lee & K.Matsuoka, 2019
- Coccidinaceae
- Congruentidiaceae
- Crypthecodiniaceae
- Deflandreaceae
- Dinosphaeraceae
- Endodiniaceae
- Ensiculiferaceae Zhun Li, Gottschling, K.N.Mertens, H.Gu et H.H.Shin 2020
- Ensiculifera Balech
- Matsuokaea Z.Li, K.N.Mertens, H.F.Gu & H.H.Shin, 2020
- Matsuokaea loeblichii (El.R.Cox et H.J.Arn) Zhun Li, K.N.Mertens, H.Gu et H.H.Shin 2020
- Glenodiniaceae
- Glenodinium C.G.Ehrenberg ex Ralfs
- Hemidinium
- Glenodiniopsidaceae
- Gonyaulaceae
- Haplozoonaceae
- Haplozoon
- Haplozoon ariciae
- Haplozoon armatum
- Haplozoon ezoense Wakeman, Yamaguchi et Horiguchi, 2018
- Haplozoon gracile M.Yamamoto, K.C.Wakeman, S.Tomioka et T.Horiguchi, 2020
- Haplozoon praxillellae Rueckert et Leander, 2008
- Haplozoon pugnus M.Yamamoto, K.C.Wakeman, S.Tomioka et T.Horiguchi 2020
- 異帽藻科 Heterocapsaceae
- Kolkwitziellaceae
- Kryptoperidiniaceae
- Blixaea Gottschling, 2017
- Blixaea quinquecornis (T.H.Abé) Gottschling, 2017
- Durinskia S.Carty & E.R.Cox, 1986
- Durinskia agilis (Kof. & Swezy) Saburova, Chomérat & Hoppenrath, 2012
- Durinskia baltica (Levander) Carty & E.R.Cox, 1986
- Durinskia kwazulunatalensis N.Yamada, Sym et Horiguchi 2017
- Durinskia oculata (F.Stein) Hansen & Flaim
- Galeidinium Tamura & Horiguchi, 2005
- Unruhdinium Gottschling, 2017
- Unruhdinium durandii (S.Rodriguez, Couté, Ten-Hage & Mascarell) Moestrup & Calado, 2018
- Unruhdinium jiulongense (H.Gu) Gottschling, 2017，模式種
- Unruhdinium kevei (Grigorszky & F.Vasas) Gottschling, 2017
- Unruhdinium penardii (Lemmermann) Gottschling, 2017
- Lessardiaceae
- 尖甲藻科 Oxytoxaceae
- Paradiniaceae
- 多甲藻科 Peridiniaceae
- 擬多甲藻科 Peridiniopsidaceae
- Pfiesteriaceae
- Aduncodinium N.S.Kang, H.J.Jeong & Ø.Moestrup, 2014
- Aduncodinium glandula (E.C.Herdman) N.S.Kang, H.J.Jeong & Ø.Moestrup, 2014，模式種
- Cryptoperidiniopsis Steidinger, Landsberg, P.L.Mason, Vogelbein, Tester & Litaker, 2006
- Cryptoperidiniopsis brodyi Steidinger, Landsberg, Mason, Vogelbein, Tester & Litaker, 2006
- Luciella P.L.Mason, Jeong, Litaker, Reece & Steidinger, 2007
- Pfiesteria K.A.Steidinger & J.M.Burkholder, 1996
- Pseudopfiesteria Litaker, Steidinger, Mason, Shields & Tester, 2005
- Speroidium Moestrup & Calado, 2018
- Tyrannodinium A.J.Calado, S.C.Craveiro, N.Daugbjerg & Ø.Moestrup, 2009
- Tyrannodinium berolinense (Lemmermann) Calado, Craveiro, Daugbjerg et Moestrup 2009，基異名：Peridinium berolinense Lemmermann, 1900
- Phthanoperidiniaceae
- Stelladinium M.R.Bradford, 1975
- Podolampaceae
- 足甲藻科 Podolampadaceae
- Protoperidinaceae
- 原多甲藻科 Protoperidiniaceae
- Ptychochscaceae
- Thecadiniaceae
- Thecadiniopsis R.L.Croome, G.M.Hallegraeff & P.A.Tyler, 1988
- Thecadiniopsis tasmanica [2]
- 科的地位未定的屬：
- Adinimonas J.Schiller, 1928
- Amphidiniella Horiguchi, 1995
- Bagredinium K.P.Da, F.Zongo, G.Mascarell & A.Couté, 2004
- Baldinia Gert Hansen & Daugbjerg, 2007
- Baldinia bernardiensis (Chodat & Zender) Moestrup et al.
- Baldinia droopii[3]
- Bellatudinium J.Yu, M.Sun, S.Sun & S.Mao, 1981
- Berghiella Kofoid & Michener, 1911
- Bitubericysta M.-J.Soncini, 1992
- Blysmatodinium A.McMinn, 1992
- Brandtodinium Probert & Siano, 2014
- Brandtodinium nutricula (Brandt) Probert & Siano, 2014
- Caladoa Z.Luo, K.N.Mertens & H.F.Gu, 2019
- Caladoa arcachonensis Z.Luo, K.N.Mertens & H.F.Gu, 2019[4]
- Discorsia S.Duxbury, 1977
- Krutzschidinium Strauss, 1991
- Melanodinium Schiller, 1935
- Nottbeckia G.Hansen, Daugbjerg & Moestrup, 2018
- Nottbeckia ochracea (Levander) G.Hansen, Daugbjerg et Moestrup 2018
- Octodinium Wrenn & Hart, 1988
- Pachydinium Pavillard, 1915
- Peridiniella
- Pernambugia Janofske & Karwath, 2000
- Pernambugia tuberosa (Kamptner) Janofske & Karwath
- Rhinodinium S.Murray, M.Hoppenrath, S.Yoshimatsu, S.Toriumi & J.Larsen, 2006
- Spiraublax Kofoid, 1911
- Spiraulax Kofoid, 1911
- Spiraulax jolliffei (G.Murray & F.Whitting) Kof.
- Spiraulax kofoidii Graham
- Stoeckeria H.J.Jeong, J.S.Kim, J.Y.Park, J.H.Kim, S.Kim, I.Lee, S.H.Lee, J.H.Ha & W.H.Yih, 2005
- Umbodinium Bint, 1983
- Vulcanodinium E.Nézan & N.Chomérat, 2011
- Vulcanodinium rugosum E.Nézan & N.Chomérat, 2011
R.L. Croome , G.M. Hallegraeff & P.A. Tyler (1987) Thecadiniopsis tasmanica gen. et sp. nov. (Dinophyta: Thecadiniaceae) from Tasmanian freshwaters, British Phycological Journal, 22:4, 325-333, DOI: 10.1080/00071618700650381
Gert Hansen, Niels Daugbjerg & Øjvind Moestrup (2023) Baldinia droopii sp. nov. (Suessiales, Dinophyceae), a new species from a small rainwater rock pool near Tvärminne, south-western Finland, Phycologia, 62:1, 68-82, DOI: 10.1080/00318884.2022.2142430
Zhaohe Luo, Kenneth Neil Mertens, Elizabeth Nézan, Li Gu, Vera Pospelova, Hikmah Thoha & Haifeng Gu (2019) Morphology, ultrastructure and molecular phylogeny of cyst-producing Caladoa arcachonensis gen. et sp. nov. (Peridiniales, Dinophyceae) from France and Indonesia, European Journal of Phycology, 54:2, 235-248, DOI: 10.1080/09670262.2018.1558287
