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石袍菌科（学名：Petrotogaceae）为石袍菌目的惟一一科细菌。此科的模式属为石袍菌属(Petrotoga)。
本科包括以下属：
- Defluviitoga Ben Hania et al. 2012
- 地袍菌属 Geotoga Davey et al. 1993
- Marinitoga Wery et al. 2001
- Marinitoga aeolica Postec et al. 2023[1]
- Marinitoga arctica Steinsbu et al. 2016
- Marinitoga camini Wery et al. 2001
- Marinitoga hydrogenitolerans Postec et al. 2005
- Marinitoga lauensis L'Haridon et al. 2021
- Marinitoga litoralis Postec et al. 2010
- Marinitoga okinawensis Nunoura et al. 2007
- Marinitoga piezophila Alain et al. 2002
- 海洋袍菌属 Oceanotoga Jayasinghearachchi and Lal 2011
- 石袍菌属 Petrotoga Davey et al. 1993
- Tepiditoga Mori et al. 2021
- Tepiditoga spiralis Mori et al. 2021[2]
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