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微咽线虫科（学名：Microlaimidae）为链环目的一个科。
本科包括以下属：[1]
- Acanthomicrolaimus Stewart & Nicholas, 1987
- Aponema Jensen, 1978
- Bathynox Bussau & Vopel, 1999
- 球咽线虫属 Bolbolaimus Cobb, 1920
- Calicoganna Bussau & Vopel, 1999
- Caligocanna Bussau, 1993
- Calomicrolaimus Lorenzen, 1976
- Cinctonema Cobb, 1920
- Crassolaimus Kreis, 1929
- Ixonema Lorenzen, 1971
- Jejulaimus Tchesunov, Jeong & Lee, 2021
- Macrodontium Armenteros, Vincx & Decraemer, 2010
- Maragnopsia Leduc, 2016
- Microlaimoides Allgen, 1942
- 微咽线虫属 Microlaimus de Man, 1880
- Ohridia
- Pseudomicrolaimus Sergeeva, 1976
- Spirobolbolaimus Soetaert & Vincx, 1988
- Ungulilaimella Allgén, 1958
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