This list of Independent Baptist higher education institutions consists of institutions of higher education that are Independent Baptist in the United States.
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- Arlington Baptist University (Arlington, Texas)
- Ambassador Baptist College (Lattimore, North Carolina)
- Boston Baptist College (Boston, Massachusetts)
- Carolina University (formerly Piedmont International University; Winston-Salem, North Carolina)
- Chesapeake Baptist College (Severn, Maryland)
- Commonwealth Baptist College (Lexington, Kentucky)
- Crown College of the Bible (Powell, Tennessee)
- Detroit Baptist Theological Seminary (Allen Park, Michigan)
- Fairhaven Baptist College (Chesterton, Indiana)
- Faith Baptist Bible College and Theological Seminary (Ankeny, Iowa)
- Golden State Baptist College (Santa Clara, California)
- Heartland Baptist Bible College (Oklahoma City, Oklahoma)
- Hyles–Anderson College (Crown Point, Indiana)
- Louisiana Baptist University (Shreveport, Louisiana)
- Maranatha Baptist University (Watertown, Wisconsin)
- Midwestern Baptist College (Pontiac, Michigan)
- Mission University (Springfield, Missouri)
- New England Baptist College (Southington, CT)
- Pensacola Christian College (Pensacola, Florida)
- Temple Baptist Seminary (Winston-Salem, North Carolina)
- Trinity Baptist College (Jacksonville, Florida)
- West Coast Baptist College (Lancaster, California)